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Matthieu Schapira
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2020 – today
- 2024
- [j17]Merveille K. I. Eguida, Guillaume Bret, François Sindt, Fengling Li, Irene Chau, Suzanne Ackloo, Cheryl H. Arrowsmith, Albina Bolotokova, Pegah Ghiabi, Elisa Gibson, Levon Halabelian, Scott Houliston, Rachel J. Harding, Ashley Hutchinson, Peter Loppnau, Sumera Perveen, Almagul Seitova, Hong Zeng, Matthieu Schapira, Didier Rognan:
Subpocket Similarity-Based Hit Identification for Challenging Targets: Application to the WDR Domain of LRRK2. J. Chem. Inf. Model. 64(13): 5344-5355 (2024) - [j16]Evianne Rovers, Matthieu Schapira:
Benchmarking Methods for PROTAC Ternary Complex Structure Prediction. J. Chem. Inf. Model. 64(15): 6162-6173 (2024) - [j15]Fengling Li, Suzanne Ackloo, Cheryl H. Arrowsmith, Fuqiang Ban, Christopher J. Barden, Hartmut Beck, Jan Beránek, Francois Berenger, Albina Bolotokova, Guillaume Bret, Marko Breznik, Emanuele Carosati, Irene Chau, Yu Chen, Artem Cherkasov, Dennis Della Corte, Katrin Denzinger, Aiping Dong, Sorin Draga, Ian Dunn, Kristina Edfeldt, Aled M. Edwards, Merveille K. I. Eguida, Paul Eisenhuth, Lukas Friedrich, Alexander Fuerll, Spencer S. Gardiner, Francesco Gentile, Pegah Ghiabi, Elisa Gibson, Marta Glavatskikh, Christoph Gorgulla, Judith Guenther, Anders Gunnarsson, Filipp Gusev, Evgeny Gutkin, Levon Halabelian, Rachel J. Harding, Alexander Hillisch, Laurent Hoffer, Anders Hogner, Scott Houliston, John J. Irwin, Olexandr Isayev, Aleksandra Ivanova, Célien Jacquemard, Austin J. Jarrett, Jan H. Jensen, Dmitri Kireev, Julian Kleber, S. Benjamin Koby, David Koes, Ashutosh Kumar, Maria G. Kurnikova, Alina Kutlushina, Uta F. Lessel, Fabian Liessmann, Sijie Liu, Wei Lu, Jens Meiler, Akhila Mettu, Guzel Minibaeva, Rocco Moretti, Connor J. Morris, Chamali Narangoda, Theresa Noonan, Leon Obendorf, Szymon Pach, Amit Pandit, Sumera Perveen, Gennady Poda, Pavel G. Polishchuk, Kristina Puls, Vera Pütter, Didier Rognan, Dylan Roskams-Edris, Christina E. M. Schindler, François Sindt, Vojtech Spiwok, Casper Steinmann, Rick L. Stevens, Valerij Talagayev, Damon Tingey, Oanh Vu, W. Patrick Walters, Xiaowen Wang, Zhenyu Wang, Gerhard Wolber, Clemens Alexander Wolf, Lars Wortmann, Hong Zeng, Carlos A. Zepeda, Kam Y. J. Zhang, Jixian Zhang, Shuangjia Zheng, Matthieu Schapira:
CACHE Challenge #1: Targeting the WDR Domain of LRRK2, A Parkinson's Disease Associated Protein. J. Chem. Inf. Model. 64(22): 8521-8536 (2024) - 2023
- [j14]Serah W. Kimani, Julie Owen, Stuart R. Green, Fengling Li, Yanjun Li, Aiping Dong, Peter J. Brown, Suzanne Ackloo, David Kuter, Cindy Yang, Miranda Macaskill, Stephen Scott Mackinnon, Cheryl H. Arrowsmith, Matthieu Schapira, Vijay Shahani, Levon Halabelian:
Discovery of a Novel DCAF1 Ligand Using a Drug-Target Interaction Prediction Model: Generalizing Machine Learning to New Drug Targets. J. Chem. Inf. Model. 63(13): 4070-4078 (2023) - 2022
- [j13]Lihua Liu, Evianne Rovers, Matthieu Schapira:
ChemBioPort: an online portal to navigate the structure, function and chemical inhibition of the human proteome. Database J. Biol. Databases Curation 2022(2022) (2022) - 2020
- [j12]Aïda Bafeta, Jason Bobe, Jon Clucas, Pattie Pramila Gonsalves, Célya Gruson-Daniel, Kathy L. Hudson, Arno Klein, Anirudh Krishnakumar, Anna McCollister-Slipp, Ariel B. Lindner, Dusan Misevic, John A. Naslund, Camille Nebeker, Aki Nikolaidis, Irene V. Pasquetto, Gabriela Sánchez, Matthieu Schapira, Tohar Scheininger, Felix Schoeller, Anibal Sólon Heinsfeld, François Taddei:
Ten simple rules for open human health research. PLoS Comput. Biol. 16(9) (2020)
2010 – 2019
- 2019
- [j11]Lihua Liu, David R. Damerell, Leonidas Koukouflis, Yufeng Tong, Brian D. Marsden, Matthieu Schapira:
UbiHub: a data hub for the explorers of ubiquitination pathways. Bioinform. 35(16): 2882-2884 (2019) - [i1]Matthieu Schapira, The Open Lab Notebook Consortium, Rachel J. Harding:
Open laboratory notebooks: good for science, good for society, good for scientists. F1000Research 8: 87 (2019) - 2014
- [j10]Muhammad A. Shah, Emily Denton, Lihua Liu, Matthieu Schapira:
ChromoHub V2: cancer genomics. Bioinform. 30(4): 590-592 (2014) - 2013
- [j9]Kong T. Nguyen, Fengling Li, Gennadiy Poda, David Smil, Masoud Vedadi, Matthieu Schapira:
Strategy to Target the Substrate Binding site of SET Domain Protein Methyltransferases. J. Chem. Inf. Model. 53(3): 681-691 (2013) - 2012
- [j8]Lihua Liu, Xi Ting Zhen, Emily Denton, Brian D. Marsden, Matthieu Schapira:
ChromoHub: a data hub for navigators of chromatin-mediated signalling. Bioinform. 28(16): 2205-2206 (2012) - 2011
- [j7]Calvin Santiago, Kong T. Nguyen, Matthieu Schapira:
Druggability of methyl-lysine binding sites. J. Comput. Aided Mol. Des. 25(12): 1171-1178 (2011) - [j6]Valérie Campagna-Slater, Man Wai Mok, Kong T. Nguyen, Miklos Feher, Rafael Najmanovich, Matthieu Schapira:
Structural Chemistry of the Histone Methyltransferases Cofactor Binding Site. J. Chem. Inf. Model. 51(3): 612-623 (2011) - [j5]Izhar Wallach, Navdeep Jaitly, Kong T. Nguyen, Matthieu Schapira, Ryan H. Lilien:
Normalizing Molecular Docking Rankings using Virtually Generated Decoys. J. Chem. Inf. Model. 51(8): 1817-1830 (2011) - 2010
- [j4]Minghua Wang, Man Wai Mok, Hong Harper, Wen Hwa Lee, Jinrong Min, Stefan Knapp, Udo C. T. Oppermann, Brian D. Marsden, Matthieu Schapira:
Structural genomics of histone tail recognition. Bioinform. 26(20): 2629-2630 (2010) - [j3]Valérie Campagna-Slater, Andrew G. Arrowsmith, Yong Zhao, Matthieu Schapira:
Pharmacophore Screening of the Protein Data Bank for Specific Binding Site Chemistry. J. Chem. Inf. Model. 50(3): 358-367 (2010)
2000 – 2009
- 2009
- [j2]Valérie Campagna-Slater, Matthieu Schapira:
Evaluation of Virtual Screening as a Tool for Chemical Genetic Applications. J. Chem. Inf. Model. 49(9): 2082-2091 (2009) - 2000
- [j1]Matthieu Schapira, Bruce M. Raaka, Herbert H. Samuels, Ruben Abagyan:
Rational discovery of novel nuclear hormone receptor antagonists. Proc. Natl. Acad. Sci. USA 97(3): 1008-1013 (2000)
Coauthor Index
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