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ORCIDRonny Lorenz
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- affiliation: University of Vienna, Institute for Theoretical Chemistry, Austria
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2020 – today
- 2024
[j15]Sarah von Löhneysen
, Thomas Spicher, Yuliia Varenyk, Hua-Ting Yao, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler:
Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction. J. Comput. Biol. 31(6): 549-563 (2024)- 2023
- [j14]Hua-Ting Yao, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler:
Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package. Algorithms Mol. Biol. 18(1): 8 (2023) - [j13]Stefan Badelt, Ronny Lorenz, Ivo L. Hofacker:
DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model. Bioinform. 39(1) (2023) - [j12]Yuliia Varenyk, Thomas Spicher, Ivo L. Hofacker, Ronny Lorenz:
Modified RNAs and predictions with the ViennaRNA Package. Bioinform. 39(11) (2023) - [j11]Maria Waldl, Thomas Spicher, Ronny Lorenz, Irene K. Beckmann, Ivo L. Hofacker, Sarah von Löhneysen, Peter F. Stadler:
Local RNA folding revisited. J. Bioinform. Comput. Biol. 21(4): 2350016:1-2350016:19 (2023) - [c8]Sarah von Löhneysen, Thomas Spicher, Yuliia Varenyk, Hua-Ting Yao, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler:
Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction. ISBRA 2023: 267-279 - [e4]Ana Cecília Roque, Denis Gracanin, Ronny Lorenz, Athanasios Tsanas, Nathalie Bier, Ana Fred, Hugo Gamboa:
Biomedical Engineering Systems and Technologies - 15th International Joint Conference, BIOSTEC 2022, Virtual Event, February 9-11, 2022, Revised Selected Papers. Communications in Computer and Information Science 1814, Springer 2023, ISBN 978-3-031-38853-8 [contents] - 2022
- [j10]Christoph Flamm, Julia Wielach, Michael T. Wolfinger, Stefan Badelt, Ronny Lorenz, Ivo L. Hofacker:
Caveats to Deep Learning Approaches to RNA Secondary Structure Prediction. Frontiers Bioinform. 2 (2022) - [e3]Claudine Géhin, Bruno Wacogne, Alexandre Douplik, Ronny Lorenz, Bethany K. Bracken, Catia Pesquita, Ana Fred, Hugo Gamboa:
Biomedical Engineering Systems and Technologies - 14th International Joint Conference, BIOSTEC 2021, Virtual Event, February 11-13, 2021, Revised Selected Papers. Communications in Computer and Information Science 1710, Springer 2022, ISBN 978-3-031-20663-4 [contents] - [e2]Ronny Lorenz, Ana Fred, Hugo Gamboa:
Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2022, Volume 3: BIOINFORMATICS, Online Streaming, February 9-11, 2022. SCITEPRESS 2022, ISBN 978-989-758-552-4 [contents] - 2021
- [j9]Gregor Entzian, Ivo L. Hofacker, Yann Ponty, Ronny Lorenz, Andrea Tanzer:
RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes. Bioinform. 37(15): 2126-2133 (2021) - [e1]Ronny Lorenz, Ana Fred, Hugo Gamboa:
Proceedings of the 14th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2021, Volume 3: BIOINFORMATICS, Online Streaming, February 11-13, 2021. SCITEPRESS 2021, ISBN 978-989-758-490-9 [contents] - 2020
- [c7]Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler:
Efficient Computation of Base-pairing Probabilities in Multi-strand RNA Folding. BIOINFORMATICS 2020: 23-31 - [c6]Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler:
Efficient Algorithms for Co-folding of Multiple RNAs. BIOSTEC (Selected Papers) 2020: 193-214
2010 – 2019
- 2019
- [c5]William B. Langdon, Ronny Lorenz:
Evolving AVX512 Parallel C Code Using GP. EuroGP 2019: 245-261 - 2018
- [c4]William B. Langdon, Justyna Petke, Ronny Lorenz:
Evolving Better RNAfold Structure Prediction. EuroGP 2018: 220-236 - 2017
- [c3]William B. Langdon, Ronny Lorenz:
Improving SSE parallel code with grow and graft genetic programming. GECCO (Companion) 2017: 1537-1538 - 2016
- [j8]Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler:
RNA folding with hard and soft constraints. Algorithms Mol. Biol. 11: 8 (2016) - [j7]Ronny Lorenz, Dominik Luntzer, Ivo L. Hofacker, Peter F. Stadler, Michael T. Wolfinger:
SHAPE directed RNA folding. Bioinform. 32(1): 145-147 (2016) - 2015
- [j6]Christopher A. Lavender, Ronny Lorenz, Ge Zhang, Rita Tamayo, Ivo L. Hofacker, Kevin M. Weeks:
Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA. PLoS Comput. Biol. 11(5) (2015) - 2014
- [j5]Fabian Amman, Michael T. Wolfinger, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler, Sven Findeiß:
TSSAR: TSS annotation regime for dRNA-seq data. BMC Bioinform. 15: 89 (2014) - 2013
- [j4]Ronny Lorenz, Stephan H. Bernhart, Jing Qin, Christian Höner zu Siederdissen, Andrea Tanzer, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler:
2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 10(4): 832-844 (2013) - 2012
- [j3]Ronny Lorenz, Ivo L. Hofacker, Stephan H. Bernhart:
Folding RNA/DNA hybrid duplexes. Bioinform. 28(19): 2530-2531 (2012) - [c2]Ronny Lorenz, Stephan H. Bernhart, Fabian Externbrink, Jing Qin, Christian Höner zu Siederdissen, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler:
RNA Folding Algorithms with G-Quadruplexes. BSB 2012: 49-60 - 2011
- [j2]Ronny Lorenz, Stephan H. Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker:
ViennaRNA Package 2.0. Algorithms Mol. Biol. 6: 26 (2011)
2000 – 2009
- 2009
- [c1]Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker:
2D Projections of RNA Folding Landscapes. GCB 2009: 11-20 - 2008
- [j1]Andreas R. Gruber, Ronny Lorenz, Stephan H. Bernhart, Richard Neuböck, Ivo L. Hofacker:
The Vienna RNA Websuite. Nucleic Acids Res. 36(Web-Server-Issue): 70-74 (2008)
Coauthor Index
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