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2020 – today
- 2020
[j52]Ming-Ju Tsai, Jyun-Rong Wang, Shinn-Jang Ho, Li-Sun Shu, Wen-Lin Huang, Shinn-Ying Ho:
GREMA: modelling of emulated gene regulatory networks with confidence levels based on evolutionary intelligence to cope with the underdetermined problem. Bioinform. 36(12): 3833-3840 (2020)
2010 – 2019
- 2018
- [j51]Papangkorn Inkeaw
, Jakramate Bootkrajang, Phasit Charoenkwan, Sanparith Marukatat, Shinn-Ying Ho, Jeerayut Chaijaruwanich:
Recognition-based character segmentation for multi-level writing style. Int. J. Document Anal. Recognit. 21(1-2): 21-39 (2018) - [c35]Tzu-Yun Lo, Pei-Yin Wei, Chia-Heng Yen, Jiing-Feng Lirng, Muh-Hwa Yang, Pen-Yuan Chu, Shinn-Ying Ho:
Prediction of Metastasis in Head and Neck Cancer from Computed Tomography Images. ICRAI 2018: 18-23 - 2017
- [j50]Jyun-Rong Wang, Wen-Lin Huang, Ming-Ju Tsai, Kai-Ti Hsu, Hui-Ling Huang, Shinn-Ying Ho:
ESA-UbiSite: accurate prediction of human ubiquitination sites by identifying a set of effective negatives. Bioinform. 33(5): 661-668 (2017) - [j49]Papangkorn Inkeaw, Phasit Charoenkwan, Hui-Ling Huang, Sanparith Marukatat, Shinn-Ying Ho, Jeerayut Chaijaruwanich:
Recognition of handwritten Lanna Dhamma characters using a set of optimally designed moment features. Int. J. Document Anal. Recognit. 20(4): 259-274 (2017) - 2016
- [j48]Yi-Fan Liou, Hui-Ling Huang, Shinn-Ying Ho:
A hydrophobic spine stabilizes a surface-exposed α-helix according to analysis of the solvent-accessible surface area. BMC Bioinform. 17(S-19): 171-182 (2016) - [j47]Tamara Vasylenko, Yi-Fan Liou, Po-Chin Chiou, Hsiao-Wei Chu, Yung-Sung Lai, Yu-Ling Chou, Hui-Ling Huang, Shinn-Ying Ho:
SCMBYK: prediction and characterization of bacterial tyrosine-kinases based on propensity scores of dipeptides. BMC Bioinform. 17(S-19): 203-217 (2016) - [c34]Papangkorn Inkeaw, Jakramate Bootkrajang, Phasit Charoenkwan, Sanparith Marukatat, Shinn-Ying Ho, Jeerayut Chaijaruwanich:
Rule-Based Page Segmentation for Palm Leaf Manuscript on Color Image. ICADL 2016: 127-136 - 2015
- [j46]Yi-Hsiung Chen, Chi-Dung Yang, Ching-Ping Tseng, Hsien-Da Huang, Shinn-Ying Ho:
GeNOSA: inferring and experimentally supporting quantitative gene regulatory networks in prokaryotes. Bioinform. 31(13): 2151-2158 (2015) - [j45]Hui-Ling Huang, Yu-Chung Wu, Li-Jen Su, Yun-Ju Huang, Phasit Charoenkwan, Wen-Liang Chen, Hua-Chin Lee, William C. Chu, Shinn-Ying Ho:
Discovery of prognostic biomarkers for predicting lung cancer metastasis using microarray and survival data. BMC Bioinform. 16: 54:1-54:14 (2015) - [j44]Tamara Vasylenko, Yi-Fan Liou, Hong-An Chen, Phasit Charoenkwan, Hui-Ling Huang, Shinn-Ying Ho:
SCMPSP: Prediction and characterization of photosynthetic proteins based on a scoring card method. BMC Bioinform. 16(S-1): S8 (2015) - [j43]Yerukala Sathipati Srinivasulu, Jyun-Rong Wang, Kai-Ti Hsu, Ming-Ju Tsai, Phasit Charoenkwan, Wen-Lin Huang, Hui-Ling Huang, Shinn-Ying Ho:
Characterizing informative sequence descriptors and predicting binding affinities of heterodimeric protein complexes. BMC Bioinform. 16(S18): S14 (2015) - 2014
- [j42]Yi-Fan Liou, Phasit Charoenkwan, Yerukala Sathipati Srinivasulu, Tamara Vasylenko, Shih-Chung Lai, Hua-Chin Lee, Yi-Hsiung Chen, Hui-Ling Huang, Shinn-Ying Ho:
SCMHBP: prediction and analysis of heme binding proteins using propensity scores of dipeptides. BMC Bioinform. 15(S-16): S4 (2014) - 2013
- [j41]Phasit Charoenkwan, Eric Hwang, Robert W. Cutler, Hua-Chin Lee, Li-Wei Ko, Hui-Ling Huang, Shinn-Ying Ho:
HCS-Neurons: identifying phenotypic changes in multi-neuron images upon drug treatments of high-content screening. BMC Bioinform. 14(S-16): S12 (2013) - [c33]Hui-Ling Huang, Ming-Hsin Hsu, Hua-Chin Lee, Phasit Charoenkwan, Shinn-Jang Ho, Shinn-Ying Ho:
Prediction of Mouse Senescence from HE-Stain Liver Images Using an Ensemble SVM Classifier. ACIIDS (2) 2013: 325-334 - [c32]Li-Wei Ko, Hua-Chin Lee, Shu-Fang Tsai, Tsung-Chin Shih, Ya-Ting Chuang, Hui-Ling Huang, Shinn-Ying Ho, Chin-Teng Lin:
EEG-based motion sickness classification system with genetic feature selection. CCMB 2013: 158-164 - [c31]Watshara Shoombuatong, Hui-Ling Huang, Jeerayut Chaijaruwanich, Phasit Charoenkwan, Hua-Chin Lee, Shinn-Ying Ho:
Predicting protein crystallization using a simple scoring card method. CIBCB 2013: 23-30 - [c30]Hui-Ling Huang, Yerukala Sathipati Srinivasulu, Phasit Charoenkwan, Hua-Chin Lee, Shinn-Ying Ho:
Designing predictors of halophilic and non-halophilic proteins using support vector machines. CIBCB 2013: 230-237 - [c29]Tse-Chuan Hsu, Chih-Hung Chang, William C. Chu, Shinn-Ying Ho, Nien-Lin Hsueh, Wei-Bin Lee:
Applying Cloud Computing Technologies to Gerontology and Geriatrics Health Care System (GGHCS). QSIC 2013: 355-360 - 2012
- [j40]Hui-Ling Huang, Phasit Charoenkwan, Te-Fen Kao, Hua-Chin Lee, Fang-Lin Chang, Wen-Lin Huang, Shinn-Jang Ho, Li-Sun Shu, Wen-Liang Chen, Shinn-Ying Ho:
Prediction and analysis of protein solubility using a novel scoring card method with dipeptide composition. BMC Bioinform. 13(S-17): S3 (2012) - [c28]Chin-Teng Lin, Shu-Fang Tsai, Hua-Chin Lee, Hui-Ling Huang, Shinn-Ying Ho, Li-Wei Ko:
Motion sickness estimation system. IJCNN 2012: 1-6 - 2011
- [j39]Shinn-Ying Ho, Chih-Yuan Chao, Hui-Ling Huang, Tzai-Wen Chiu, Phasit Charoenkwan, Eric Hwang:
NeurphologyJ: an automatic neuronal morphology quantification method and its application in pharmacological discovery. BMC Bioinform. 12: 230 (2011) - [j38]Chun-Wei Tung, Matthias Ziehm, Andreas Kämper, Oliver Kohlbacher, Shinn-Ying Ho:
POPISK: T-cell reactivity prediction using support vector machines and string kernels. BMC Bioinform. 12: 446 (2011) - [j37]Hui-Ling Huang, I-Che Lin, Yi-Fan Liou, Chia-Ta Tsai, Kai-Ti Hsu, Wen-Lin Huang, Shinn-Jang Ho, Shinn-Ying Ho:
Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties. BMC Bioinform. 12(S-1): S47 (2011)
2000 – 2009
- 2009
- [j36]Wen-Lin Huang, Chun-Wei Tung, Hui-Ling Huang, Shinn-Ying Ho:
Predicting protein subnuclear localization using GO-amino-acid composition features. Biosyst. 98(2): 73-79 (2009) - [j35]Hsin-Nan Lin, Ching-Tai Chen, Ting-Yi Sung, Shinn-Ying Ho, Wen-Lian Hsu:
Protein subcellular localization prediction of eukaryotes using a knowledge-based approach. BMC Bioinform. 10(S-15): 8 (2009) - [j34]Hsi-Yuan Huang, Heng-Yi Chang, Chih-Hung Chou, Ching-Ping Tseng, Shinn-Ying Ho, Chi-Dung Yang, Yih-Wei Ju, Hsien-Da Huang:
sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes. Nucleic Acids Res. 37(Database-Issue): 150-154 (2009) - 2008
- [j33]Wen-Lin Huang, Chun-Wei Tung, Shih-Wen Ho, Shiow-Fen Hwang, Shinn-Ying Ho:
ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization. BMC Bioinform. 9 (2008) - [j32]Chun-Wei Tung, Shinn-Ying Ho:
Computational identification of ubiquitylation sites from protein sequences. BMC Bioinform. 9 (2008) - [j31]Shinn-Ying Ho, Hung-Sui Lin, Weei-Hurng Liauh, Shinn-Jang Ho:
OPSO: Orthogonal Particle Swarm Optimization and Its Application to Task Assignment Problems. IEEE Trans. Syst. Man Cybern. Part A 38(2): 288-298 (2008) - [j30]Ming-Hao Hung, Li-Sun Shu, Shinn-Jang Ho, Shiow-Fen Hwang, Shinn-Ying Ho:
A Novel Intelligent Multiobjective Simulated Annealing Algorithm for Designing Robust PID Controllers. IEEE Trans. Syst. Man Cybern. Part A 38(2): 319-330 (2008) - [c27]Hui-Ling Huang, Kuan-Wei Chen, Shinn-Jang Ho, Shinn-Ying Ho:
Inferring S-system models of genetic networks from a time-series real data set of gene expression profiles. IEEE Congress on Evolutionary Computation 2008: 2788-2793 - [c26]Wen-Lin Huang, Chun-Wei Tung, Shih-Wen Ho, Shinn-Ying Ho:
ProLoc-rGO: Using rule-based knowledge with Gene Ontology terms for prediction of protein subnuclear localization. CIBCB 2008: 201-206 - 2007
- [j29]Chun-Wei Tung, Shinn-Ying Ho:
POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties. Bioinform. 23(8): 942-949 (2007) - [j28]Liang-Tsung Huang, M. Michael Gromiha, Shinn-Ying Ho:
iPTREE-STAB: interpretable decision tree based method for predicting protein stability changes upon mutations. Bioinform. 23(10): 1292-1293 (2007) - [j27]Hui-Ling Huang, Chong-Cheng Lee, Shinn-Ying Ho:
Selecting a minimal number of relevant genes from microarray data to design accurate tissue classifiers. Biosyst. 90(1): 78-86 (2007) - [j26]Shinn-Ying Ho, Fu-Chieh Yu, Chia-Yun Chang, Hui-Ling Huang:
Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM method. Biosyst. 90(1): 234-241 (2007) - [j25]Wen-Lin Huang, Hung-Ming Chen, Shiow-Fen Hwang, Shinn-Ying Ho:
Accurate prediction of enzyme subfamily class using an adaptive fuzzy k-nearest neighbor method. Biosyst. 90(2): 405-413 (2007) - [j24]Wen-Lin Huang, Chun-Wei Tung, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho:
ProLoc: Prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features. Biosyst. 90(2): 573-581 (2007) - [j23]Hung-Ming Chen, Bo-Fu Liu, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho:
SODOCK: Swarm optimization for highly flexible protein-ligand docking. J. Comput. Chem. 28(2): 612-623 (2007) - [j22]Shinn-Ying Ho, Chih-Hung Hsieh, Fu-Chieh Yu, Hui-Ling Huang:
An Intelligent Two-Stage Evolutionary Algorithm for Dynamic Pathway Identification From Gene Expression Profiles. IEEE ACM Trans. Comput. Biol. Bioinform. 4(4): 648-704 (2007) - [c25]Hui-Ling Huang, Yi-Hsiung Chen, Dwight D. Koeberl, Shinn-Ying Ho:
Boosting Evolutionary Support Vector Machine for Designing Tumor Classifiers from Microarray Data. CIBCB 2007: 32-38 - [c24]Shinn-Jang Ho, Chia-Yun Chang, Liang-Tsung Huang, Shiow-Fen Hwang, Shinn-Ying Ho:
Acquisition of rule-based knowledge for analyzing DNA-binding sites in proteins. Infoscale 2007: 39 - 2006
- [j21]Liang-Tsung Huang, M. Michael Gromiha, Shiow-Fen Hwang, Shinn-Ying Ho:
Knowledge acquisition and development of accurate rules for predicting protein stability changes. Comput. Biol. Chem. 30(6): 408-415 (2006) - [j20]Shinn-Jang Ho, Li-Sun Shu, Shinn-Ying Ho:
Optimizing fuzzy neural networks for tuning PID controllers using an orthogonal simulated annealing algorithm OSA. IEEE Trans. Fuzzy Syst. 14(3): 421-434 (2006) - [c23]Shinn-Ying Ho, Chih-Hung Hsieh, Kuan-Wei Chen, Hui-Ling Huang, Hung-Ming Chen, Shinn-Jang Ho:
Scoring Method for Tumor Prediction from Microarray Data Using an Evolutionary Fuzzy Classifier. PAKDD 2006: 520-529 - [c22]Shinn-Jang Ho, Wen-Yuan Ku, Jun-Wun Jou, Ming-Hao Hung, Shinn-Ying Ho:
Intelligent Particle Swarm Optimization in Multi-objective Problems. PAKDD 2006: 790-800 - 2005
- [j19]Jian-Hung Chen, Hung-Ming Chen, Shinn-Ying Ho:
Design of nearest neighbor classifiers: multi-objective approach. Int. J. Approx. Reason. 40(1-2): 3-22 (2005) - [j18]Shinn-Jang Ho, Shinn-Ying Ho, Ming-Hao Hung, Li-Sun Shu, Hui-Ling Huang:
Designing structure-specified mixed H2/H∞ optimal controllers using an intelligent genetic algorithm IGA. IEEE Trans. Control. Syst. Technol. 13(6): 1119-1124 (2005) - [c21]Bo-Fu Liu, Hung-Ming Chen, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho:
Flexible protein-ligand docking using particle swarm optimization. Congress on Evolutionary Computation 2005: 251-258 - [c20]Shinn-Ying Ho, Chih-Hung Hsieh, Fu-Chieh Yu, Hui-Ling Huang:
Evolutionary divide-and-conquer approach to inferring S-system models of genetic networks. Congress on Evolutionary Computation 2005: 691-698 - [c19]Shinn-Ying Ho, Chong-Cheng Lee, Hung-Ming Chen, Hui-Ling Huang:
Efficient gene selection for classification of microarray data. Congress on Evolutionary Computation 2005: 1753-1760 - [c18]Larry Huang, Wen-Lin Huang, Shinn-Ying Ho, Shiow-Fen Hwang:
Interpretable Prediction of Protein Stability Changes upon Mutation by Using Decision Tree. CIBCB 2005: 521-525 - [c17]Bo-Fu Liu, Hung-Ming Chen, Jian-Hung Chen, Shiow-Fen Hwang, Shinn-Ying Ho:
MeSwarm: memetic particle swarm optimization. GECCO 2005: 267-268 - [c16]Jian-Hung Chen, Shinn-Ying Ho, David E. Goldberg:
Quality-time analysis of multi-objective evolutionary algorithms. GECCO 2005: 1455-1462 - [c15]Shinn-Ying Ho, Chih-Hung Hsieh, Fu-Chieh Yu:
Inference of S-system Models for Large-Scale Genetic Networks. ICDE Workshops 2005: 1155 - 2004
- [j17]Shinn-Ying Ho, Li-Sun Shu, Jian-Hung Chen:
Intelligent evolutionary algorithms for large parameter optimization problems. IEEE Trans. Evol. Comput. 8(6): 522-541 (2004) - [j16]Shinn-Ying Ho, Jian-Hung Chen, Meng-Hsun Huang:
Inheritable genetic algorithm for biobjective 0/1 combinatorial optimization problems and its applications. IEEE Trans. Syst. Man Cybern. Part B 34(1): 609-620 (2004) - [j15]Shinn-Ying Ho, Hung-Ming Chen, Shinn-Jang Ho, Tai-Kang Chen:
Design of accurate classifiers with a compact fuzzy-rule base using an evolutionary scatter partition of feature space. IEEE Trans. Syst. Man Cybern. Part B 34(2): 1031-1044 (2004) - [j14]Shin-Hang Ho, Shinn-Ying Ho, Li-Sun Shu:
OSA: orthogonal simulated annealing algorithm and its application to designing mixed H2/H∞ optimal controllers. IEEE Trans. Syst. Man Cybern. Part A 34(5): 588-600 (2004) - [j13]Shinn-Ying Ho, Shinn-Jang Ho, Yi-Kuang Lin, W. C.-C. Chu:
An orthogonal simulated annealing algorithm for large floorplanning problems. IEEE Trans. Very Large Scale Integr. Syst. 12(8): 874-877 (2004) - [c14]Li-Sun Shu, Shinn-Jang Ho, Shinn-Ying Ho, Jian-Hung Chen, Ming-Hao Hung:
A Novel Multi-objective Orthogonal Simulated Annealing Algorithm for Solving Multi-objective Optimization Problems with a Large Number of Parameters. GECCO (1) 2004: 737-747 - [c13]Jian-Hung Chen, Hung-Ming Chen, Shinn-Ying Ho:
Design of Nearest Neighbor Classifiers Using an Intelligent Multi-objective Evolutionary Algorithm. PRICAI 2004: 262-271 - 2003
- [j12]Hui-Ling Huang, Shinn-Ying Ho:
Mesh optimization for surface approximation using an efficient coarse-to-fine evolutionary algorithm. Pattern Recognit. 36(5): 1065-1081 (2003) - [j11]Shinn-Ying Ho, Kual-Zheng Lee:
Design and Analysis of an Efficient Evolutionary Image Segmentation Algorithm. J. VLSI Signal Process. 35(1): 29-42 (2003) - [c12]Li-Sun Shu, Shinn-Jang Ho, Shinn-Ying Ho:
A Novel Orthogonal Simulated Annealing Algorithm for Optimization of Electromagnetic Problems. IDEAL 2003: 415-420 - [c11]Kual-Zheng Lee, Ting-Wei Liu, Shinn-Ying Ho:
Model-Based Pose Estimation of Human Motion Using Orthogonal Simulated Annealing. IDEAL 2003: 983-991 - [c10]Kual-Zheng Lee, Wei-Che Chuang, Shinn-Ying Ho:
A Non-parametric Image Segmentation Algorithm Using an Orthogonal Experimental Design Based Hill-Climbing. IDEAL 2003: 1076-1081 - 2002
- [j10]Shinn-Ying Ho, Chia-Cheng Liu, Soundy Liu:
Design of an optimal nearest neighbor classifier using an intelligent genetic algorithm. Pattern Recognit. Lett. 23(13): 1495-1503 (2002) - [c9]Shinn-Ying Ho, Chia-Cheng Liu, Soundy Liu, Jun-Wen Jou:
Design of an optimal nearest neighbor classifier using an intelligent genetic algorithm. IEEE Congress on Evolutionary Computation 2002: 594-599 - [c8]Shinn-Ying Ho, Zhen-Bang Huang, Shinn-Jang Ho:
An evolutionary approach for pose determination and interpretation of occluded articulated objects. IEEE Congress on Evolutionary Computation 2002: 1092-1097 - [c7]Shinn-Ying Ho, Tai-Kang Chen, Shinn-Jang Ho:
Design of high performance fuzzy controllers using flexible parameterized membership functions and intelligent genetic algorithms. IEEE Congress on Evolutionary Computation 2002: 1378-1383 - [c6]Jian-Hung Chen, David E. Goldberg, Shinn-Ying Ho, Kumara Sastry:
Fitness Inheritance In Multi-objective Optimization. GECCO 2002: 319-326 - 2001
- [j9]Shinn-Ying Ho, Hui-Ling Huang:
Facial modeling from an uncalibrated face image using a coarse-to-fine genetic algorithm. Pattern Recognit. 34(5): 1015-1031 (2001) - [j8]Shinn-Ying Ho, Yeong-Chinq Chen:
An efficient evolutionary algorithm for accurate polygonal approximation. Pattern Recognit. 34(12): 2305-2317 (2001) - [j7]Shinn-Ying Ho, Hui-Ling Huang:
Facial modeling from an uncalibrated face image using flexible generic parameterized facial models. IEEE Trans. Syst. Man Cybern. Part B 31(5): 706-719 (2001) - [c5]Hui-Ling Huang, Shinn-Ying Ho:
Mesh optimization for surface approximation using an efficient coarse-to-fine evolutionary algorithm. CEC 2001: 584-591 - [c4]Shinn-Ying Ho, Kual-Zheng Lee:
An efficient evolutionary image segmentation algorithm. CEC 2001: 1327-1334 - 2000
- [c3]Shinn-Ying Ho, Tai-Kang Chen, Shinn-Jang Ho:
Designing an Efficient Fuzzy classifier Using an Intelligent Genetic Algorithm. COMPSAC 2000: 293-298 - [c2]Shinn-Ying Ho, Kual-Zheng Lee:
A Simple and Fast GA-SA hybrid Image Segmentation Algorithm. GECCO 2000: 718-725 - [c1]Shinn-Ying Ho, Meng-Hsun Huang:
An Efficient Quadratic Curve Approximation Using an Intelligent Genetic Algorithm. GECCO 2000: 766
1990 – 1999
- 1998
- [j6]Shinn-Ying Ho, Hui-Ling Huang:
An analytic solution for the pose determination of human faces from a monocular image. Pattern Recognit. Lett. 19(11): 1045-1054 (1998) - 1994
- [j5]Zen Chen, Tsorng-Lin Chia, Shinn-Ying Ho:
Measuring 3-D location and shape parameters of cylinders by a spatial encoding technique. IEEE Trans. Robotics Autom. 10(5): 632-647 (1994) - 1993
- [j4]Zen Chen, Shinn-Ying Ho:
Incremental model building of polyhedral objects using structured light. Pattern Recognit. 26(1): 33-46 (1993) - [j3]Zen Chen, Chao-Ming Wang, Shinn-Ying Ho:
An effective search approach to camera parameter estimation using an arbitrary planar calibration object. Pattern Recognit. 26(5): 655-666 (1993) - [j2]Zen Chen, Shinn-Ying Ho, Din-Chang Tseng:
Polyhedral face reconstruction and modeling from a single image with structured light. IEEE Trans. Syst. Man Cybern. 23(3): 864-872 (1993) - 1991
- [j1]Zen Chen, Shinn-Ying Ho:
Computer vision for robust 3D aircraft recognition with fast library search. Pattern Recognit. 24(5): 375-390 (1991)
Coauthor Index
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