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ORCIDJean-Christophe Olivo-Marin
Jean-Christophe Olivo
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- affiliation: Institut Pasteur, Paris, France
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2020 – today
- 2024
[c107]Erwan Dereure, Christophe Kervazo, Johanne Seguin, Anikitos Garofalakis, Nathalie Mignet, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
Wavelet-Based Sparse Non-Negative Matrix Factorization for Bioluminescent Imaging Unmixing. ISBI 2024: 1-5- [c106]Benjamin Dorra, Giacomo Nardi, Antoine Habis, Jean-Philippe Annereau, Jean-Christophe Olivo-Marin, Luis Briseño-Roa, Vannary Meas-Yedid:
Semi-Supervised Segmentation with Topological Penalization for Quantifying Retinal Degeneration in Histological Sections. ISBI 2024: 1-5 - [c105]Raphael Reme, Alasdair Newson, Elsa D. Angelini, Jean-Christophe Olivo-Marin, Thibault Lagache:
Particle Tracking in Biological Images with Optical-Flow Enhanced Kalman Filtering. ISBI 2024: 1-5 - [c104]M. Santos Sano, A. Brelot, Jean-Christophe Olivo-Marin, Thibault Lagache, Giacomo Nardi:
Motion Classification Based on Geometrical Features of Trajectories. ISBI 2024: 1-4 - [i4]Antoine Habis, Roy Rosman Nathanson, Vannary Meas-Yedid, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
Scribble-based fast weak-supervision and interactive corrections for segmenting whole slide images. CoRR abs/2402.08333 (2024) - [i3]Antoine Habis, Vannary Meas-Yedid, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
Deep ContourFlow: Advancing Active Contours with Deep Learning. CoRR abs/2407.10696 (2024) - 2023
- [j26]Aleix Boquet-Pujadas
, Jean-Christophe Olivo-Marin:
Reformulating Optical Flow to Solve Image-Based Inverse Problems and Quantify Uncertainty. IEEE Trans. Pattern Anal. Mach. Intell. 45(5): 6125-6141 (2023) - [j25]Selin Aviyente, Alejandro F. Frangi, Erik Meijering, Arrate Muñoz-Barrutia, Michael Liebling, Dimitri Van De Ville, Jean-Christophe Olivo-Marin, Jelena Kovacevic, Michael Unser:
From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee. IEEE Signal Process. Mag. 40(4): 61-71 (2023) - [j24]Suvadip Mukherjee, Rituparna Sarkar, Maria Manich, Elisabeth Labruyère, Jean-Christophe Olivo-Marin:
Domain Adapted Multitask Learning for Segmenting Amoeboid Cells in Microscopy. IEEE Trans. Medical Imaging 42(1): 42-54 (2023) - [c103]Alexandre Bouyssoux, Riadh Fezzani, Jean-Christophe Olivo-Marin:
Ensemble Multiple Instance Learning for Bladder Cancer Diagnosis. ISBI 2023: 1-5 - [c102]Erwan Dereure, Christophe Kervazo, Johanne Seguin, Anikitos Garofalakis, Nathalie Mignet, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
Sparse Non-Negative Matrix Factorization for Preclinical Bioluminescent Imaging. ISBI 2023: 1-5 - [c101]Yekta Kesenci, Aleix Boquet-Pujadas, Michael Unser, Jean-Christophe Olivo-Marin:
Probing Intracellular Elasticity with Minimal-Hessian Registration. ISBI 2023: 1-5 - [c100]Diana Mandache, Emilie Benoit á la Guillaume, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid:
Cross-Modal Contrastive Learning for Robust Representation of the Extracellular Matrix in Static and Dynamic Full-Field OCT Images. ISBI 2023: 1-5 - [c99]Raphael Reme, Victor Piriou, Alison Hanson, Rafael Yuste, Alasdair Newson, Elsa D. Angelini, Jean-Christophe Olivo-Marin, Thibault Lagache:
Tracking Intermittent Particles with Self-Learned Visual Features. ISBI 2023: 1-5 - 2022
- [c98]Yekta Kesenci, Aleix Boquet-Pujadas, Emma van Bodegraven, Sandrine Étienne-Manneville, Elisabeth Labruyère, Jean-Christophe Olivo-Marin:
PDE-Constrained Optimization for Nuclear Mechanics. ICIP 2022: 2192-2195 - [c97]Antoine Habis, Vannary Meas-Yedid, Daniel Felipe Gonzalez Obando, Jean-Christophe Olivo-Marin, Elsa D. Angelini:
Smart Learning of Click and Refine for Nuclei Segmentation on Histology Images. ICIP 2022: 2281-2285 - [c96]Diana Mandache, Emilie Benoit á la Guillaume, Y. Badachi, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid:
The Lifecycle of a Neural Network in the Wild: A Multiple Instance Learning Study on Cancer Detection from Breast Biopsies Imaged with Novel Technique. ICIP 2022: 3601-3605 - [c95]Ximu Deng, Anuj Srivastava, Rituparna Sarkar, Elisabeth Labruyère, Jean-Christophe Olivo-Marin:
Characterizing Cell Shape Distributions Using k-Mode Kernel Mixtures. ICPR 2022: 2517-2523 - [c94]Alexandre Bouyssoux, Riadh Fezzani, Jean-Christophe Olivo-Marin:
Cell Instance Segmentation Using Z-Stacks in Digital Cytology. ISBI 2022: 1-4 - [c93]Ximu Deng, Rituparna Sarkar, Elisabeth Labruyere, Jean-Christophe Olivo-Marin, Anuj Srivastava:
Characterizing Cell Populations Using Statistical Shape Modes. ISBI 2022: 1-5 - [c92]Samuel Kubler, Jean-Christophe Olivo-Marin, Thibault Lagache:
Statistical Coupling Between time Point-Processes. ISBI 2022: 1-4 - [c91]Suvadip Mukherjee, Vannary Meas-Yedid, Marc Bokobza, Thibault Lagache, Alexandre Corthay, Jean-Christophe Olivo-Marin:
Spatial Analysis For Histopathology: A Statistical Approach. ISBI 2022: 1-5 - 2021
- [j23]Aleix Boquet-Pujadas, Jean-Christophe Olivo-Marin, Nancy Guillen:
Bioimage Analysis and Cell Motility. Patterns 2(1): 100170 (2021) - [j22]Suvadip Mukherjee, Thibault Lagache, Jean-Christophe Olivo-Marin:
Evaluating the Stability of Spatial Keypoints via Cluster Core Correspondence Index. IEEE Trans. Image Process. 30: 386-401 (2021) - [c90]Diana Mandache, Emilie Benoit á la Guillaume, Marie-Christine Mathieu, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid:
Leveraging Global Diagnosis For Tumor Localization In Dynamic Cell Imaging Of Breast Cancer Tissue Towards Fast Biopsying. ISBI 2021: 320-323 - [c89]Samuel Kubler, Suvadip Mukherjee, Jean-Christophe Olivo-Marin, Thibault Lagache:
A Robust and Versatile Framework to Compare Spike Detection Methods in Calcium Imaging of Neuronal Activity. ISBI 2021: 375-379 - [c88]Rituparna Sarkar, Daniel Darby, Héloise Foucambert, Sigolene M. Meilhac, Jean-Christophe Olivo-Marin:
Nu3D: 3D Nuclei Segmentation from Light-Sheet Microscopy Images of the Embryonic Heart. ISBI 2021: 929-933 - [c87]Sammit Jain, Suvadip Mukherjee, Lydia Danglot, Jean-Christophe Olivo-Marin:
Morphological Reconstruction of Detached Dendritic Spines via Geodesic Path Prediction. ISBI 2021: 944-947 - [c86]Diana Mandache, Emilie Benoit á la Guillaume, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid:
Blind Source Separation In Dynamic Cell Imaging Using Non-Negative Matrix Factorization Applied To Breast Cancer Biopsies. ISBI 2021: 1605-1608 - [c85]Suvadip Mukherjee, Rituparna Sarkar, Elisabeth Labruyère, Jean-Christophe Olivo-Marin:
A Min-Max Based Hyperparameter Estimation For Domain-Adapted Segmentation Of Amoeboid Cells. ISBI 2021: 1869-1872 - 2020
- [j21]Suvadip Mukherjee, Catalina Gonzalez-Gomez, Lydia Danglot, Thibault Lagache, Jean-Christophe Olivo-Marin:
Generalizing the Statistical Analysis of Objects' Spatial Coupling in Bioimaging. IEEE Signal Process. Lett. 27: 1085-1089 (2020) - [c84]Ximu Deng, Rituparna Sarkar, Elisabeth Labruyere, Jean-Christophe Olivo-Marin, Anuj Srivastava:
Modeling Shape Dynamics During Cell Motility in Microscopy Videos. ICIP 2020: 2491-2495 - [c83]Rituparna Sarkar, Suvadip Mukherjee, Elisabeth Labruyère, Jean-Christophe Olivo-Marin:
Learning to segment clustered amoeboid cells from brightfield microscopy via multi-task learning with adaptive weight selection. ICPR 2020: 3845-3852 - [c82]Alexandre Bouyssoux, Riadh Fezzani, Jean-Christophe Olivo-Marin:
Extended Depth of Field Preserving Color Fidelity For Automated Digital Cytology. ICPR 2020: 4398-4404 - [i2]Rituparna Sarkar, Suvadip Mukherjee, Elisabeth Labruyère, Jean-Christophe Olivo-Marin:
Learning to segment clustered amoeboid cells from brightfield microscopy via multi-task learning with adaptive weight selection. CoRR abs/2005.09372 (2020)
2010 – 2019
- 2019
- [c81]Daniel Felipe Gonzalez Obando, Jean-Christophe Olivo-Marin, Laurent Wendling, Vannary Meas-Yedid:
Vector-Based Morphological Operations on Polygons Using Straight Skeletons for Digital Pathology. DGCI 2019: 249-261 - [c80]Daniel Felipe Gonzalez Obando, Diana Mandache, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid:
Icytomine: A User-Friendly Tool for Integrating Workflows on Whole Slide Images. ECDP 2019: 181-189 - [c79]Aleix Boquet-Pujadas, Cecilia Grimaldi, Erez Raz, Jean-Christophe Olivo-Marin:
Tracking and line integration of diffuse cellular subdomains by mesh advection. EMBC 2019: 6018-6021 - 2018
- [j20]William Meiniel, Jean-Christophe Olivo-Marin, Elsa D. Angelini:
Denoising of Microscopy Images: A Review of the State-of-the-Art, and a New Sparsity-Based Method. IEEE Trans. Image Process. 27(8): 3842-3856 (2018) - [c78]Diana Mandache, E. Dalimier, J. R. Durkin, C. Boceara, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid:
Basal cell carcinoma detection in full field OCT images using convolutional neural networks. ISBI 2018: 784-787 - [c77]Oscar Bauer, Thomas Bourgeron, Jean-Christophe Olivo-Marin, Elodie Ey, Fabrice de Chaumont:
Unsupervised analysis of mouse social behaviour reveals how hyperactivity impacts social aspects in a mouse model of autism. ISBI 2018: 1149-1152 - [c76]Daniel Felipe Gonzalez Obando, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid:
Morphological operations on polygons using straight skeletons for digital pathology. ISBI 2018: 1369-1372 - 2017
- [c75]William Meiniel, Piernicola Spinicelli, Elsa D. Angelini, Alexandra Fragola, Vincent Loriette, François Orieux, Eduardo Sepulveda, Jean-Christophe Olivo-Marin:
Reducing data acquisition for fast Structured Illumination Microscopy using Compressed Sensing. ISBI 2017: 32-35 - [c74]Daniel F. Gonzalez Obando, Astri Frafjord, Inger Oynebraten, Alexandre Corthay, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid:
Multi-staining registration of large histology images. ISBI 2017: 345-348 - [c73]Oscar Bauer, Anne-Marie Le Sourd, Giacomo Nardi, Thomas Bourgeron, Jean-Christophe Olivo-Marin, Elodie Ey, Fabrice de Chaumont:
Unbiased analysis of mouse social behaviour using unsupervised machine learning. ISBI 2017: 878-881 - [c72]Thibault Lagache, Giacomo Nardi, Laetitia Bertot, Alexandre Grassart, Nathalie Sauvonnet, Jean-Christophe Olivo-Marin:
Combining global tracking with statistical classification to analyze endocytosis dynamics using TIRF microscopy. ISBI 2017: 1092-1095 - [c71]Daniel F. Gonzalez Obando, Lauriane Rohfritsch, Manon Faure, Lydia Danglot, Vannary Meas-Yedid, Jean-Christophe Olivo-Marin, Alexandre Cecilien Dufour:
Quad-edge active contours for biomedical image segmentation. ISBI 2017: 1129-1132 - 2016
- [j19]Charles Kervrann, Scott T. Acton, Jean-Christophe Olivo-Marin, Carlos Oscar Sánchez Sorzano, Michael Unser:
Introduction to the Issue on Advanced Signal Processing in Microscopy and Cell Imaging. IEEE J. Sel. Top. Signal Process. 10(1): 3-5 (2016) - [j18]Charles Kervrann, Carlos Oscar Sánchez Sorzano, Scott T. Acton, Jean-Christophe Olivo-Marin, Michael Unser:
A Guided Tour of Selected Image Processing and Analysis Methods for Fluorescence and Electron Microscopy. IEEE J. Sel. Top. Signal Process. 10(1): 6-30 (2016) - [c70]William Meiniel, Yu Gan, Christine P. Hendon, Jean-Christophe Olivo-Marin, Andrew F. Laine, Elsa D. Angelini:
Sparsity-based simplification of spectral-domain optical coherence tomography images of cardiac samples. ISBI 2016: 373-376 - [c69]Aleix Boquet-Pujadas, Maria Manich, Nancy Guillen, Jean-Christophe Olivo-Marin, Alexandre Cecilien Dufour:
Biophysical measurements in 2D and 3D live cell imaging using fluid dynamics and optical flow. ISBI 2016: 980-983 - [c68]Raphaël Marée, Stephane Dallongeville, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid:
An approach for detection of glomeruli in multisite digital pathology. ISBI 2016: 1033-1036 - 2015
- [j17]Alexandre Cecilien Dufour, Tzu-Yu Liu, Christel Ducroz, Robin Tournemenne, Beryl Cummings, Roman Thibeaux, Nancy Guillen, Alfred O. Hero III, Jean-Christophe Olivo-Marin:
Signal Processing Challenges in Quantitative 3-D Cell Morphology: More than meets the eye. IEEE Signal Process. Mag. 32(1): 30-40 (2015) - [c67]Thibault Lagache, Quentin Marcou, Antoine Bardonnet, Brice Rotureau, Philippe Bastin, Jean-Christophe Olivo-Marin:
Using steerable wavelets and minimal paths to reconstruct automatically filaments in fluorescence imaging. ICIP 2015: 706-709 - [c66]William Meiniel, Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
Image denoising by multiple compressed sensing reconstructions. ISBI 2015: 1232-1235 - 2014
- [j16]Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
An Unbiased Risk Estimator for Image Denoising in the Presence of Mixed Poisson-Gaussian Noise. IEEE Trans. Image Process. 23(3): 1255-1268 (2014) - [c65]Costanza Simoncini, Timothee Lecomte, Roman Thibeaux, Nancy Guillen, Alexandre Dufour, Jean-Christophe Olivo-Marin:
Fluid dynamics modeling of cell and membrane deformations. ISBI 2014: 262-265 - [c64]Robin Tournemenne, Christel Ducroz, Jean-Christophe Olivo-Marin, Alexandre Dufour:
3D shape analysis using overcomplete spherical wavelets: Application to BLEB detection in cell biology. ISBI 2014: 365-368 - [c63]Mariña López-Yunta, Thibault Lagache, Julien Santi-Rocca, Philippe Bastin, Jean-Christophe Olivo-Marin:
A statistical analysis of spatial clustering along cell filaments using Ripley's K function. ISBI 2014: 541-544 - 2013
- [j15]Sorin Pop, Alexandre Dufour, Jean-Francois Le Garrec, Chiara V. Ragni, Clémire Cimper, Sigolene M. Meilhac, Jean-Christophe Olivo-Marin:
Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart. Bioinform. 29(6): 772-779 (2013) - [j14]Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin:
Multiple Hypothesis Tracking for Cluttered Biological Image Sequences. IEEE Trans. Pattern Anal. Mach. Intell. 35(11): 2736-2750 (2013) - [c62]Fabrice de Chaumont, Stephane Dallongeville, Thomas Provoost, Timothee Lecomte, Alexandre Dufour, Jean-Christophe Olivo-Marin:
Icy: A user-friendly environment for algorithm development and deployment. EUSIPCO 2013: 1-5 - [c61]Christel Ducroz, Jean-Christophe Olivo-Marin, Alexandre Dufour:
Automatic detection of 3D cell protrusions using spherical wavelets. ICIP 2013: 3499-3502 - [c60]Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
Phase retrieval with sparsity priors and application to microscopy video reconstruction. ISBI 2013: 604-607 - [c59]Thibault Lagache, Vannary Meas-Yedid, Jean-Christophe Olivo-Marin:
A statistical analysis of spatial colocalization using Ripley's K function. ISBI 2013: 896-901 - [c58]Ge Yang, Jean-Christophe Olivo-Marin:
Image-based representation and modeling of spatiotemporal cell dynamics. ISBI 2013: 1198-1201 - 2012
- [j13]François Orieux, Eduardo Sepulveda, Vincent Loriette, Benoit Dubertret, Jean-Christophe Olivo-Marin:
Bayesian Estimation for Optimized Structured Illumination Microscopy. IEEE Trans. Image Process. 21(2): 601-614 (2012) - [c57]Timothee Lecomte, Roman Thibeaux, Nancy Guillen, Alexandre Dufour, Jean-Christophe Olivo-Marin:
Fluid optical flow for forces and pressure field estimation in cellular biology. ICIP 2012: 69-72 - [c56]Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
Video reconstruction using compressed sensing measurements and 3d total variation regularization for bio-imaging applications. ICIP 2012: 917-920 - [c55]Christel Ducroz, Jean-Christophe Olivo-Marin, Alexandre Dufour:
Characterization of cell shape and deformation in 3D using Spherical Harmonics. ISBI 2012: 848-851 - 2011
- [j12]Olivier Lezoray, Metin N. Gurcan, Ali Can, Jean-Christophe Olivo-Marin:
Special issue on whole slide microscopic image processing. Comput. Medical Imaging Graph. 35(7-8): 493-495 (2011) - [j11]Jean-Christophe Olivo-Marin, Michael Unser, Laure Blanc-Féraud, Andrew Laine, Boudewijn P. F. Lelieveldt:
Trends in Bioimaging and Signal Processing [In the Spotlight]. IEEE Signal Process. Mag. 28(6): 200-191 (2011) - [j10]Alexandre Dufour, Roman Thibeaux, Elisabeth Labruyere, Nancy Guillen, Jean-Christophe Olivo-Marin:
3-D Active Meshes: Fast Discrete Deformable Models for Cell Tracking in 3-D Time-Lapse Microscopy. IEEE Trans. Image Process. 20(7): 1925-1937 (2011) - [c54]Christel Ducroz, Jean-Christophe Olivo-Marin, Alexandre Dufour:
Spherical Harmonics based extraction and annotation of cell shape in 3D time-lapse microscopy sequences. EMBC 2011: 6619-6622 - [c53]Sorin Pop, Alexandre Dufour, Jean-Christophe Olivo-Marin:
Image filtering using anisotropic structure tensor for cell membrane enhancement in 3D microscopy. ICIP 2011: 2041-2044 - [c52]Yoann Le Montagner, Marcio de Moraes Marim, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
Numerical evaluation of sampling bounds for near-optimal reconstruction in compressed sensing. ICIP 2011: 3073-3076 - [c51]Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
Comparison of reconstruction algorithms in compressed sensing applied to biological imaging. ISBI 2011: 105-108 - [c50]Fabrice de Chaumont, Stephane Dallongeville, Jean-Christophe Olivo-Marin:
ICY: A new open-source community image processing software. ISBI 2011: 234-237 - [c49]Nicolas Hervé, Aude Servais, Eric Thervet, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid:
Statistical color texture descriptors for histological images analysis. ISBI 2011: 724-727 - [c48]Praveen Pankajakshan, Alain Dieterlen, Gilbert Engler, Zvi Kam, Laure Blanc-Féraud, Josiane Zerubia, Jean-Christophe Olivo-Marin:
Wavefront sensing for aberration modeling in fluorescence macroscopy. ISBI 2011: 905-908 - [c47]Sorin Pop, Alexandre Dufour, Jean-Francois Le Garrec, Chiara V. Ragni, Margaret E. Buckingham, Sigolene M. Meilhac, Jean-Christophe Olivo-Marin:
A fast and automated framework for extraction of nuclei from cluttered 3D images in fluorescence microscopy. ISBI 2011: 2113-2116 - 2010
- [j9]Sylvain Berlemont, Jean-Christophe Olivo-Marin:
Combining Local Filtering and Multiscale Analysis for Edge, Ridge, and Curvilinear Objects Detection. IEEE Trans. Image Process. 19(1): 74-84 (2010) - [c46]Nicolas Hervé, Aude Servais, Eric Thervet, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid:
Improving histology images segmentation through spatial constraints and supervision. ICIP 2010: 3633-3636 - [c45]Nicolas Chenouard, Johanna Buisson, Isabelle Bloch, Philippe Bastin, Jean-Christophe Olivo-Marin:
Curvelet analysis of kymograph for tracking bi-directional particles in fluorescence microscopy images. ICIP 2010: 3657-3660 - [c44]Fabrice de Chaumont, Stephane Dallongeville, Nicolas Chenouard, Jean-Christophe Olivo-Marin:
Tracking multiple articulated objects using physics engines: Improvement using multi scale decomposition and quadtrees. ICIP 2010: 4637-4640 - [c43]Marcio de Moraes Marim, Michael Atlan, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
Compressed sensing for digital holographic microscopy. ISBI 2010: 684-687 - [i1]Marcio de Moraes Marim, Michael Atlan, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
Compressed Sensing with off-axis frequency-shifting holography. CoRR abs/1004.5305 (2010)
2000 – 2009
- 2009
- [c42]Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin:
Particle tracking in fluorescent microscopy images improved by morphological source separation. ICIP 2009: 821-824 - [c41]Fabrice de Chaumont, Alexandre Dufour, Jean-Christophe Olivo-Marin:
Tracking articulated objects with physics engines. ICIP 2009: 885-888 - [c40]Marcio de Moraes Marim, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
Compressed Sensing in microscopy with random projections in the Fourier domain. ICIP 2009: 2121-2124 - [c39]Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin:
Multiple hypothesis tracking in cluttered condition. ICIP 2009: 3621-3624 - [c38]Fabrice de Chaumont, Alexandre Dufour, Pierre Serreau, Johnathan Chabout, Sylvia Münter, Friedrich Frischknecht, Sylvie Granon, Jean-Christophe Olivo-Marin:
Using Physics Engines to Track Objects in Images. ISBI 2009: 1342-1345 - [c37]Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin:
Multiple Hypothesis Tracking in Microscopy Images. ISBI 2009: 1346-1349 - [c36]Marcio de Moraes Marim, Elsa D. Angelini, Jean-Christophe Olivo-Marin:
A Compressed Sensing Approach for Biological Microscopic Image Processing. ISBI 2009: 1374-1377 - 2008
- [c35]Jean-Christophe Olivo-Marin:
Session MA2: Advances in bioimaging and analysis. ACSCC 2008: 45-46 - [c34]Alexandre Dufour, Jean-Christophe Olivo-Marin:
Tracking live cells in 4D microscopy: From active surfaces to active meshes. ACSCC 2008: 51-55 - [c33]Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin:
Feature-aided particle tracking. ICIP 2008: 1796-1799 - [c32]Nicolas Chenouard, Samantha Vernhettes, Isabelle Bloch, Jean-Christophe Olivo-Marin:
Morphological source separation for particle tracking in complex biological environments. ICPR 2008: 1-4 - [c31]Alexandre Dufour, Vannary Meas-Yedid, Alexandre Grassart, Jean-Christophe Olivo-Marin:
Automated quantification of cell endocytosis using active contours and wavelets. ICPR 2008: 1-4 - [c30]Clovis Tauber, Pedro Felipe Gardeazabal Rodriguez, Vincent Loriette, Nicolas Chenouard, Benoit Dubertret, Jean-Christophe Olivo-Marin:
Fast and automatic reconstruction of structured illumination microscopy images with multiscale products. ICPR 2008: 1-4 - [c29]Praveen Pankajakshan, Bo Zhang, Laure Blanc-Féraud, Zvi Kam, Jean-Christophe Olivo-Marin, Josiane Zerubia:
Blind deconvolution for diffraction-limited fluorescence microscopy. ISBI 2008: 740-743 - [c28]Sylvain Berlemont, Régis Tournebize, Aaron Bensimon, Jean-Christophe Olivo-Marin:
Detection of full length microtubules in live microscopy images. ISBI 2008: 851-854 - [c27]Marcio de Moraes Marim, Bo Zhang, Jean-Christophe Olivo-Marin, Christophe Zimmer:
Improving single particle localization with an empirically calibrated Gaussian kernel. ISBI 2008: 1003-1006 - [c26]Fabrice de Chaumont, Nicolas Chenouard, Aurelie Mouret, Pierre Marie Lledo, Jean-Christophe Olivo-Marin:
A multi-threaded program architecture for an asynchronous and highly responsive GUI for automatic neuronal survival quantification. ISBI 2008: 1007-1010 - [c25]Bo Zhang, Nicolas Chenouard, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid:
Statistical colocalization in biological imaging with false discovery control. ISBI 2008: 1327-1330 - 2007
- [c24]Sylvain Berlemont, Aaron Bensimon, Jean-Christophe Olivo-Marin:
Detection of Curvilinear Objects in Noisy Image using Feature-Adapted Beamlet Transform. ICASSP (1) 2007: 1225-1228 - [c23]Sylvain Berlemont, Aaron Bensimon, Jean-Christophe Olivo-Marin:
Feature-Adapted Fast Slant Stack. ICIP (4) 2007: 57-60 - [c22]Bo Zhang, Jalal Fadili, Jean-Luc Starck, Jean-Christophe Olivo-Marin:
Multiscale Variance-Stabilizing Transform for Mixed-Poisson-Gaussian Processes and its Applications in Bioimaging. ICIP (6) 2007: 233-236 - 2006
- [j8]Christophe Zimmer, Bo Zhang, Alexandre Dufour, Ayméric Thébaud, Sylvain Berlemont, Vannary Meas-Yedid, Jean-Christophe Olivo-Marin:
On the digital trail of mobile cells. IEEE Signal Process. Mag. 23(3): 54-62 (2006) - [j7]Auguste Genovesio, Tim Liedl, Valentina Emiliani, Wolfgang J. Parak, M. Coppey-Moisan, Jean-Christophe Olivo-Marin:
Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots. IEEE Trans. Image Process. 15(5): 1062-1070 (2006) - [c21]Jean-Christophe Olivo-Marin:
An Overview of Image Analysis in Multidimensional Biological Microscopy. ICASSP (5) 2006: 1173-1176 - [c20]Jacques Pecreaux, Christophe Zimmer, Jean-Christophe Olivo-Marin:
Biophysical Active Contours for Cell Tracking I: Tension and Bending. ICIP 2006: 1949-1952 - [c19]Estelle Glory, Vannary Meas-Yedid, Georges Stamon, Christian Pinset, Jean-Christophe Olivo-Marin:
Automated image-based screening of cell cultures for cell therapy. ISBI 2006: 259-262 - [c18]Bo Zhang, Jost Enninga, Jean-Christophe Olivo-Marin, Christophe Zimmer:
Automated super-resolution detection of fluorescent rods in 2D. ISBI 2006: 1296-1299 - 2005
- [j6]Christophe Zimmer, Jean-Christophe Olivo-Marin:
Coupled Parametric Active Contours. IEEE Trans. Pattern Anal. Mach. Intell. 27(11): 1838-1842 (2005) - [j5]Alexandre Dufour, V. Shinin, S. Tajbakhsh, N. Guillen-Aghion, Jean-Christophe Olivo-Marin, Christophe Zimmer:
Segmenting and Tracking Fluorescent Cells in Dynamic 3-D Microscopy With Coupled Active Surfaces. IEEE Trans. Image Process. 14(9): 1396-1410 (2005) - [c17]Estelle Glory, Vannary Meas-Yedid, Christian Pinset, Jean-Christophe Olivo-Marin, Georges Stamon:
A Quantitative Criterion to Evaluate Color Segmentations Application to Cytological Images. ACIVS 2005: 227-234 - 2004
- [c16]Estelle Glory, A. Faure, Vannary Meas-Yedid, Florence Cloppet, Christian Pinset, Georges Stamon, Jean-Christophe Olivo-Marin:
A Quantification Tool to Analyse Stained Cell Cultures. ICIAR (2) 2004: 84-91 - [c15]Auguste Genovesio, Ziad Belhassine, Jean-Christophe Olivo-Marin:
Adaptive gating in gaussian bayesian multi-target tracking. ICIP 2004: 147-150 - [c14]Vannary Meas-Yedid, Estelle Glory, E. Morelon, Christian Pinset, Georges Stamon, Jean-Christophe Olivo-Marin:
Automatic Color Space Selection for Biological Image Segmentation. ICPR (3) 2004: 514-517 - [c13]Auguste Genovesio, Jean-Christophe Olivo-Marin:
Split and Merge Data Association Filter for Dense Multi-target Tracking. ICPR (4) 2004: 677-680 - [c12]Christophe Zimmer, Jean-Christophe Olivo-Marin, Bo Zhang:
Tracking Fluorescent Cells With Coupled Geometric Active Contours. ISBI 2004: 476-479 - [c11]Nicolas Dey, Laure Blanc-Féraud, Josiane Zerubia, Christophe Zimmer, Jean-Christophe Olivo-Marin, Zvi Kam:
A Deconvolution Method for Confocal Microscopy with Total Variation Regularization. ISBI 2004: 1223-1226 - [c10]Jean-Christophe Olivo-Marin, Auguste Genovesio, Bo Zhang:
Interacting Multiple Model Based Method to Track Moving Fluorescent Biological Spots. ISBI 2004: 1239-1242 - 2003
- [c9]Auguste Genovesio, Bo Zhang, Jean-Christophe Olivo-Marin:
Tracking of multiple fluorescent biological objects in three dimensional video microscopy. ICIP (1) 2003: 1105-1108 - 2002
- [j4]Jean-Christophe Olivo-Marin:
Extraction of spots in biological images using multiscale products. Pattern Recognit. 35(9): 1989-1996 (2002) - [j3]Christophe Zimmer, Elisabeth Labruyere, Vannary Meas-Yedid, Nancy Guillen, Jean-Christophe Olivo-Marin:
Segmentation and Tracking of Migrating Cells in Videomicroscopy with Parametric Active Contours: A Tool for Cell-Based Drug Testing. IEEE Trans. Medical Imaging 21(10): 1212-1221 (2002) - [c8]Christophe Zimmer, Elisabeth Labruyere, Vannary Meas-Yedid, Nancy Guillen, Jean-Christophe Olivo-Marin:
Improving Active Contours for Segmentation and Tracking of Motile Cells in Videomicroscopy. ICPR (2) 2002: 286-289 - [c7]Vannary Meas-Yedid, Sorin Tilie, Jean-Christophe Olivo-Marin:
Color Image Segmentation Based on Markov Random Field Clustering for Histological Image Analysis. ICPR (1) 2002: 796-799 - [c6]Christophe Zimmer, Elisabeth Labruyere, Vannary Meas-Yedid, Nancy Guillen, Jean-Christophe Olivo-Marin:
Quantitative analysis of cellular shape and motility with improved active contours. ISBI 2002: 859-862 - 2001
- [c5]G. Cuartero, Vincent Galy, Ulf Nehrbass, Vannary Meas-Yedid, Jean-Christophe Olivo-Marin:
Three dimensional spot detection by multiscale analysis. ICIP (1) 2001: 317-320 - 2000
- [c4]Vannary Meas-Yedid, Jean-Christophe Olivo-Marin:
Active Contours for the Movement and Motility Analysis of Biological Objects. ICIP 2000: 196-199
1990 – 1999
- 1997
- [j2]Joachim Deubler, Jean-Christophe Olivo:
A Wavelet-Based Multiresolution Method to Automatically Register Images. J. Math. Imaging Vis. 7(3): 199-209 (1997) - [c3]Sébastien Nguyen Ngoc, Frédéric Briquet-Laugier, Christian Boulin, Jean-Christophe Olivo:
Adaptive detection for tracking moving biological objects in video microscopy sequences. ICIP (3) 1997: 484-487 - 1996
- [c2]Jean-Christophe Olivo:
Automatic detection of spots in biological images by a wavelet-based selective filtering technique. ICIP (1) 1996: 311-314 - 1994
- [j1]Jean-Christophe Olivo:
Automatic Threshold Selection Using the Wavelet Transform. CVGIP Graph. Model. Image Process. 56(3): 205-218 (1994) - 1993
- [c1]Jean-Christophe Olivo:
Image segmentation by wavelet-based automatic threshold selection. VCIP 1993
Coauthor Index
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