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ORCIDSantiago Marco-Sola
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2020 – today
- 2024
[j9]Lorién López-Villellas
, Rubén Langarita-Benítez, Asaf Badouh, Víctor Soria Pardos, Quim Aguado-Puig, Guillem López-Paradís, Max Doblas, Javier Setoain, Chulho Kim, Makoto Ono, Adrià Armejach, Santiago Marco-Sola, Jesús Alastruey-Benedé, Pablo Ibáñez, Miquel Moretó:
GenArchBench: A genomics benchmark suite for arm HPC processors. Future Gener. Comput. Syst. 157: 313-329 (2024)- [c10]Julian Pavon, Iván Vargas Valdivieso, Carlos Rojas, César Hernández, Mehmet Aslan, Roger Figueras, Yichao Yuan, Joël Lindegger, Mohammed Alser, Francesc Moll, Santiago Marco-Sola, Oguz Ergin, Nishil Talati, Onur Mutlu, Osman S. Unsal, Mateo Valero, Adrián Cristal:
QUETZAL: Vector Acceleration Framework for Modern Genome Sequence Analysis Algorithms. ISCA 2024: 597-612 - 2023
- [j8]Santiago Marco-Sola, Jordan M. Eizenga, Andrea Guarracino, Benedict Paten, Erik Garrison, Miquel Moretó:
Optimal gap-affine alignment in O(s) space. Bioinform. 39(2) (2023) - [j7]Quim Aguado-Puig, Max Doblas, Christos Matzoros, Antonio Espinosa, Juan Carlos Moure, Santiago Marco-Sola, Miquel Moretó:
WFA-GPU: gap-affine pairwise read-alignment using GPUs. Bioinform. 39(12) (2023) - [j6]Lorién López-Villellas, Carl Christian Kjelgaard Mikkelsen, Juan José Galano-Frutos, Santiago Marco-Sola, Jesús Alastruey-Benedé, Pablo Ibáñez, Miquel Moretó, Javier Sancho, Pablo García-Risueño:
Accurate and efficient constrained molecular dynamics of polymers using Newton's method and special purpose code. Comput. Phys. Commun. 288: 108742 (2023) - [j5]Abbas Haghi, Santiago Marco-Sola, Lluc Alvarez, Dionysios Diamantopoulos, Christoph Hagleitner, Miquel Moretó:
WFA-FPGA: An efficient accelerator of the wavefront algorithm for short and long read genomics alignment. Future Gener. Comput. Syst. 149: 39-58 (2023) - [c9]Lorién López-Villellas, Esteve Pineda-Sánchez, Asaf Badouh, Santiago Marco-Sola, Pablo Ibáñez, Jesús Alastruey-Benedé, Miquel Moretó:
RISC-V for Genome Data Analysis: Opportunities and Challenges. DCIS 2023: 1-6 - [c8]Abbas Haghi, Lluc Alvarez, Jordi Fornt, Juan Miguel De Haro Ruiz, Roger Figueras, Max Doblas, Santiago Marco-Sola, Miquel Moretó:
WFAsic: A High-Performance ASIC Accelerator for DNA Sequence Alignment on a RISC-V SoC. ICPP 2023: 392-401 - [c7]Max Doblas, Oscar Lostes-Cazorla, Quim Aguado-Puig, Nick Cebry, Pau Fontova-Musté, Christopher Frances Batten, Santiago Marco-Sola, Miquel Moretó:
GMX: Instruction Set Extensions for Fast, Scalable, and Efficient Genome Sequence Alignment. MICRO 2023: 1466-1480 - 2022
- [j4]David Castells-Rufas, Santiago Marco-Sola, Juan Carlos Moure, Quim Aguado-Puig, Antonio Espinosa:
FPGA Acceleration of Pre-Alignment Filters for Short Read Mapping With HLS. IEEE Access 10: 22079-22100 (2022) - [j3]Quim Aguado-Puig, Santiago Marco-Sola, Juan Carlos Moure, David Castells-Rufas, Lluc Alvarez, Antonio Espinosa, Miquel Moretó:
Accelerating Edit-Distance Sequence Alignment on GPU Using the Wavefront Algorithm. IEEE Access 10: 63782-63796 (2022) - [c6]Víctor Soria Pardos, Max Doblas, Guillem López-Paradís, Gerard Candón, Narcís Rodas, Xavier Carril, Pau Fontova-Musté, Neiel Leyva, Santiago Marco-Sola, Miquel Moretó:
Sargantana: A 1 GHz+ In-Order RISC-V Processor with SIMD Vector Extensions in 22nm FD-SOI. DSD 2022: 254-261 - 2021
- [c5]Abbas Haghi, Santiago Marco-Sola, Lluc Alvarez, Dionysios Diamantopoulos, Christoph Hagleitner, Miquel Moretó:
An FPGA Accelerator of the Wavefront Algorithm for Genomics Pairwise Alignment. FPL 2021: 151-159 - [c4]David Castells-Rufas, Santiago Marco-Sola, Quim Aguado-Puig, Antonio Espinosa-Morales, Juan Carlos Moure, Lluc Alvarez, Miquel Moretó:
OpenCL-based FPGA Accelerator for Semi-Global Approximate String Matching Using Diagonal Bit-Vectors. FPL 2021: 174-178 - 2020
- [c3]Michele Cancilla, Laura Canalini, Federico Bolelli, Stefano Allegretti, Salvador Carrión, Roberto Paredes, Jon Ander Gómez, Simone Leo, Marco Enrico Piras, Luca Pireddu, Asaf Badouh, Santiago Marco-Sola, Lluc Alvarez, Miquel Moretó, Costantino Grana:
The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications. ICPR 2020: 9881-9888
2010 – 2019
- 2019
- [j2]Angelika Merkel, Marcos Fernández-Callejo, Eloi Casals, Santiago Marco-Sola, Ronald P. Schuyler, Ivo Glynne Gut, Simon C. Heath:
gemBS: high throughput processing for DNA methylation data from bisulfite sequencing. Bioinform. 35(5): 737-742 (2019) - 2017
- [b1]Santiago Marco-Sola:
Efficient approximate string matching techniques for sequence alignment. Polytechnic University of Catalonia, Spain, 2017 - 2015
- [j1]Alejandro Chacón, Santiago Marco-Sola, Antonio Espinosa, Paolo Ribeca, Juan Carlos Moure:
Boosting the FM-Index on the GPU: Effective Techniques to Mitigate Random Memory Access. IEEE ACM Trans. Comput. Biol. Bioinform. 12(5): 1048-1059 (2015) - 2014
- [c2]Alejandro Chacón, Santiago Marco-Sola, Antonio Espinosa, Paolo Ribeca, Juan Carlos Moure:
Thread-cooperative, bit-parallel computation of levenshtein distance on GPU. ICS 2014: 103-112 - [c1]Alejandro Chacón, Santiago Marco-Sola, Antonio Espinosa, Paolo Ribeca, Juan Carlos Moure:
FM-Index on GPU: A Cooperative Scheme to Reduce Memory Footprint. ISPA 2014: 1-9
Coauthor Index
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last updated on 2024-09-12 02:30 CEST by the dblp team
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