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Nicolas Matentzoglu

Nicolas A. Matentzoglu

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2020 – today

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2024
[j22]
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  - journals/bioinformatics/CaufieldHEHJMKMRHRM24
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J. Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas Matentzoglu, Hyeongsik Kim, Sierra A. T. Moxon, Justin T. Reese, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall:
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning. Bioinform. 40(3) (2024)
[i11]
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  - journals/corr/abs-2405-03345
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Lars Vogt, Philip Strömert, Nicolas Matentzoglu, Naouel Karam, Marcel Konrad, Manuel Prinz, Roman Baum:
FAIR 2.0: Extending the FAIR Guiding Principles to Address Semantic Interoperability. CoRR abs/2405.03345 (2024)
[i10]
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  - journals/corr/abs-2406-02623
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Kathleen R. Mullen, Imke Tammen, Nicolas A. Matentzoglu, Marius Mather, Christopher J. Mungall, Melissa A. Haendel, Frank W. Nicholas, Sabrina Toro, the Vertebrate Breed Ontology Consortium:
The Vertebrate Breed Ontology: Towards Effective Breed Data Standardization. CoRR abs/2406.02623 (2024)
[i9]
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  - journals/corr/abs-2409-13906
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Harshad Hegde, Jennifer Vendetti, Damien Goutte-Gattat, J. Harry Caufield, John Graybeal, Nomi L. Harris, Naouel Karam, Christian Kindermann, Nicolas Matentzoglu, James A. Overton, Mark A. Musen, Christopher J. Mungall:
A Change Language for Ontologies and Knowledge Graphs. CoRR abs/2409.13906 (2024)
2023
[j21]
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Déborah Caucheteur, Zoë May Pendlington, Paola Roncaglia, Julien Gobeill, Luc Mottin, Nicolas Matentzoglu, Donat Agosti, David Osumi-Sutherland, Helen E. Parkinson, Patrick Ruch:
COVoc and COVTriage: novel resources to support literature triage. Bioinform. 39(1) (2023)
[j20]
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  - journals/biomedsem/ChanTDMSGVMRMH23
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Lauren E. Chan, Anne E. Thessen, William D. Duncan, Nicolas Matentzoglu, Charles Schmitt, Cynthia J. Grondin, Nicole A. Vasilevsky, Julie A. McMurry, Peter N. Robinson, Christopher J. Mungall, Melissa A. Haendel:
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond. J. Biomed. Semant. 14(1): 3 (2023)
[j19]
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Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Asiyah Y. Lin, Blake Martin, Nicolas A. Matentzoglu, Daniella Meeker, Justin T. Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingmin Aaron Zhang, Joshua C. Denny, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Melissa A. Haendel, Peter N. Robinson, Lawrence E. Hunter, Michael G. Kahn:
Ontologizing health systems data at scale: making translational discovery a reality. npj Digit. Medicine 6 (2023)
[c34]
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Nicolas Matentzoglu, Ian Braun, Anita R. Caron, Damien Goutte-Gattat, Benjamin M. Gyori, Nomi L. Harris, Emily Hartley, Harshad B. Hegde, Sven Hertling, Charles Tapley Hoyt, Hyeongsik Kim, Huanyu Li, James A. McLaughlin, Cássia Trojahn, Nicole A. Vasilevsky, Christopher J. Mungall:
A simple standard for ontological mappings 2023: updates on data model, collaborations and tooling. OM@ISWC 2023: 73-78
[i8]
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  - journals/corr/abs-2302-10800
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J. Harry Caufield, Tim E. Putman, Kevin Schaper, Deepak R. Unni, Harshad Hegde, Tiffany J. Callahan, Luca Cappelletti, Sierra A. T. Moxon, Vida Ravanmehr, Seth Carbon, Lauren E. Chan, Katherina Cortes, Kent A. Shefchek, Glass Elsarboukh, James P. Balhoff, Tommaso Fontana, Nicolas Matentzoglu, Richard M. Bruskiewich, Anne E. Thessen, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall, Justin T. Reese:
KG-Hub - Building and Exchanging Biological Knowledge Graphs. CoRR abs/2302.10800 (2023)
[i7]
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  - journals/corr/abs-2304-02711
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J. Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas Matentzoglu, HyeongSik Kim, Sierra A. T. Moxon, Justin T. Reese, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall:
Structured prompt interrogation and recursive extraction of semantics (SPIRES): A method for populating knowledge bases using zero-shot learning. CoRR abs/2304.02711 (2023)
[i6]
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  - journals/corr/abs-2307-05727
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Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya Bathla Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin T. Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook E. Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter:
An Open-Source Knowledge Graph Ecosystem for the Life Sciences. CoRR abs/2307.05727 (2023)
[i5]
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  - journals/corr/abs-2310-03666
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Nicolas Matentzoglu, J. Harry Caufield, Harshad B. Hegde, Justin T. Reese, Sierra A. T. Moxon, Hyeongsik Kim, Nomi L. Harris, Melissa A. Haendel, Christopher J. Mungall:
MapperGPT: Large Language Models for Linking and Mapping Entities. CoRR abs/2310.03666 (2023)
2022
[j18]
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Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022(2022) (2022)
[j17]
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Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland:
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Database J. Biol. Databases Curation 2022(2022) (2022)
[j16]
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  - journals/bmcbi/FisherSMNFCPOCJ22
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Malcolm E. Fisher, Erik Segerdell, Nicolas Matentzoglu, Mardi J. Nenni, Joshua D. Fortriede, Stanley Chu, Troy J. Pells, David Osumi-Sutherland, Praneet Chaturvedi, Christina James-Zorn, Nivitha Sundararaj, Vaneet S. Lotay, Virgilio Ponferrada, Dong Zhuo Wang, Eugene Kim, Sergei Agalakov, Bradley I. Arshinoff, Kamran Karimi, Peter D. Vize, Aaron M. Zorn:
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. BMC Bioinform. 23(1): 99 (2022)
[c33]
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  - conf/icbo/BalhoffBCMOM22
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James P. Balhoff, Ugur Bayindir, Anita R. Caron, Nicolas Matentzoglu, David Osumi-Sutherland, Christopher J. Mungall:
Ubergraph: Integrating OBO Ontologies into a Unified Semantic Graph. ICBO 2022: 1-9
[c32]
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  - conf/icbo/HartleyOBMOW22
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Emily Hartley, Daniel Olson, Ian Braun, Nicolas Matentzoglu, James A. Overton, Ramona L. Walls:
Building an Application Ontology and Knowledge Graph for Rare Disease Patient-Level Data. ICBO 2022: 1
[c31]
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  - conf/icbo/OvertonJMDVHMP22
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James A. Overton, Rebecca C. Jackson, Nicolas Matentzoglu, William D. Duncan, Randi Vita, Nomi L. Harris, Christopher J. Mungall, Bjoern Peters:
COB: A Core Ontology for Biology and Biomedicine. ICBO 2022: 1
[c30]
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  - conf/icbo/OvertonJTTVOMV22
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James A. Overton, Rebecca C. Jackson, Sabrina Toro, Shawn Zheng Kai Tan, Bradley Varner, David Osumi-Sutherland, Nicolas Matentzoglu, Nicole A. Vasilevsky:
OBO Academy: Training Materials for Bioontologists. ICBO 2022: 1
[c29]
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  - conf/icbo/ToroMMVRHMHLTN22
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Sabrina Toro, Nicolas Matentzoglu, Kathleen R. Mullen, Nicole A. Vasilevsky, Halie Rando, Melissa A. Haendel, Christopher J. Mungall, Zhi-Liang Hu, Gregoire Leroy, Imke Tammen, Frank W. Nicholas:
Classifying Animal Breeds with the Vertebrate Breed Ontology (VBO). ICBO 2022: 1-7
[c28]
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  - conf/semweb/MatentzogluFGHH22
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Nicolas Matentzoglu, Joe E. Flack, John Graybeal, Nomi L. Harris, Harshad B. Hegde, Charles Tapley Hoyt, Hyeongsik Kim, Sabrina Toro, Nicole A. Vasilevsky, Christopher J. Mungall:
A simple standard for ontological mappings 2022: updates of data model and outlook. OM@ISWC 2022: 61-66
[c27]
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  - conf/semweb/TrojahnM22
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Cássia Trojahn, Nicolas Matentzoglu:
What should be the minimum requirements for making FAIR ontology alignments? OM@ISWC 2022: 220-222
[i4]
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  - journals/corr/abs-2207-02056
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Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland:
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. CoRR abs/2207.02056 (2022)
[i3]
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  - journals/corr/abs-2209-04732
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Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Melissa A. Haendel, Asiyah Y. Lin, Blake Martin, Nicolas Matentzoglu, Daniella Meeker, Justin T. Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingman A. Zhang, Peter N. Robinson, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Lawrence E. Hunter, Michael G. Kahn:
Ontologizing Health Systems Data at Scale: Making Translational Discovery a Reality. CoRR abs/2209.04732 (2022)
2021
[j15]
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  - journals/biodb/JacksonMOVBBCCD21
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Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters:
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database J. Biol. Databases Curation 2021 (2021)
[j14]
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  - journals/nar/0001GMCLVDBBBCC21
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Sebastian Köhler, Michael A. Gargano, Nicolas Matentzoglu, Leigh Carmody, David Lewis-Smith, Nicole A. Vasilevsky, Daniel Danis, Ganna Balagura, Gareth Baynam, Amy M. Brower, Tiffany J. Callahan, Christopher G. Chute, Johanna L. Est, Peter D. Galer, Shiva Ganesan, Matthias Griese, Matthias Haimel, Julia Pazmandi, Marc Hanauer, Nomi L. Harris, Michael Hartnett, Maximilian Hastreiter, Fabian Hauck, Yongqun He, Tim Jeske, Hugh Kearney, Gerhard Kindle, Christoph Klein, Katrin Knoflach, Roland Krause, David Lagorce, Julie A. McMurry, Jillian A. Miller, Monica C. Munoz-Torres, Rebecca L. Peters, Christina K. Rapp, Ana Rath, Shahmir A. Rind, Avi Z. Rosenberg, Michael M. Segal, Markus G. Seidel, Damian Smedley, Tomer Talmy, Yarlalu Thomas, Samuel A. Wiafe, Julie Xian, Zafer Yüksel, Ingo Helbig, Christopher J. Mungall, Melissa A. Haendel, Peter N. Robinson:
The Human Phenotype Ontology in 2021. Nucleic Acids Res. 49(Database-Issue): D1207-D1217 (2021)
[j13]
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  - journals/patterns/ReeseUCCRCSGBFB21
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Justin T. Reese, Deepak R. Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon, Kent A. Shefchek, Benjamin M. Good, James P. Balhoff, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall:
KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response. Patterns 2(1): 100155 (2021)
[j12]
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Ghader Kurdi, Jared Leo, Nicolas Matentzoglu, Bijan Parsia, Uli Sattler, Sophie Forge, Gina Donato, Will Dowling:
A comparative study of methods for a priori prediction of MCQ difficulty. Semantic Web 12(3): 449-465 (2021)
[c26]
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  - conf/icbo/ChanVTMDMH21
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Lauren E. Chan, Nicole A. Vasilevsky, Anne E. Thessen, Nicolas Matentzoglu, William D. Duncan, Christopher J. Mungall, Melissa A. Haendel:
A Semantic Model Leveraging Pattern-based Ontology Terms to Bridge Environmental Exposures and Health Outcomes. ICBO 2021: 48-55
[c25]
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Nicole A. Vasilevsky, Sabrina Toro, Nicolas Matentzoglu, Dazhi Jiao, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall:
Reclassification of Infectious Disease in the Mondo Disease Ontology. ICBO 2021: 104-109
[i2]
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  - journals/corr/abs-2112-07051
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Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR abs/2112.07051 (2021)
2020
[j11]
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Kent A. Shefchek, Nomi L. Harris, Michael A. Gargano, Nicolas Matentzoglu, Deepak R. Unni, Matthew H. Brush, Dan Keith, Tom Conlin, Nicole A. Vasilevsky, Xingmin Aaron Zhang, James P. Balhoff, Larry Babb, Susan M. Bello, Hannah Blau, Yvonne M. Bradford, Seth Carbon, Leigh Carmody, Lauren E. Chan, Valentina Cipriani, Alayne Cuzick, Maria G. Della Rocca, Nathan A. Dunn, Shahim Essaid, Petra Fey, Christian A. Grove, Jean-Philippe F. Gourdine, Ada Hamosh, Midori A. Harris, Ingo Helbig, Maureen E. Hoatlin, Marcin P. Joachimiak, Simon Jupp, Kenneth B. Lett, Suzanna E. Lewis, Craig McNamara, Zoë May Pendlington, Clare Pilgrim, Tim E. Putman, Vida Ravanmehr, Justin T. Reese, Erin Rooney Riggs, Sofia M. C. Robb, Paola Roncaglia, James Seager, Erik Segerdell, Morgan Similuk, Andrea L. Storm, Courtney Thaxon, Anne E. Thessen, Julius O. B. Jacobsen, Julie A. McMurry, Tudor Groza, Sebastian Köhler, Damian Smedley, Peter N. Robinson, Christopher J. Mungall, Melissa A. Haendel, Monica C. Munoz-Torres, David Osumi-Sutherland:
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Res. 48(Database-Issue): D704-D715 (2020)
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Jared Leo, Nicolas Matentzoglu, Uli Sattler, Bijan Parsia:
A systematic survey of temporal requirements of bio-health ontologies. Semantic Web 11(4): 657-688 (2020)
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Nicole A. Vasilevsky, Shahim Essaid, Nicolas Matentzoglu, Nomi L. Harris, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall:
Mondo Disease Ontology: Harmonizing Disease Concepts Across the World (short paper). ICBO/ODLS 2020: 1-2

2010 – 2019

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2019
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Jared Leo, Ghader Kurdi, Nicolas Matentzoglu, Bijan Parsia, Ulrike Sattler, Sophie Forge, Gina Donato, Will Dowling:
Ontology-Based Generation of Medical, Multi-term MCQs. Int. J. Artif. Intell. Educ. 29(2): 145-188 (2019)
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Jean-Philippe F. Gourdine, Matthew H. Brush, Nicole A. Vasilevsky, Kent A. Shefchek, Sebastian Köhler, Nicolas Matentzoglu, Monica C. Munoz-Torres, Julie A. McMurry, Xingmin Aaron Zhang, Peter N. Robinson, Melissa A. Haendel:
Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery. Database J. Biol. Databases Curation 2019: baz114 (2019)
[j7]
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Sebastian Köhler, Leigh Carmody, Nicole A. Vasilevsky, Julius O. B. Jacobsen, Daniel Danis, Jean-Philippe F. Gourdine, Michael A. Gargano, Nomi L. Harris, Nicolas Matentzoglu, Julie A. McMurry, David Osumi-Sutherland, Valentina Cipriani, James P. Balhoff, Tom Conlin, Hannah Blau, Gareth Baynam, Richard Palmer, Dylan Gratian, Hugh J. S. Dawkins, Michael Segal, Anna C. Jansen, Ahmed Muaz, Willie H. Chang, Jenna Bergerson, Stanley J. F. Laulederkind, Zafer Yüksel, Sergi Beltran, Alexandra F. Freeman, Panagiotis I. Sergouniotis, Daniel Durkin, Andrea L. Storm, Marc Hanauer, Michael Brudno, Susan M. Bello, Murat Sincan, Kayli Rageth, Matthew T. Wheeler, Renske Oegema, Halima Lourghi, Maria G. Della Rocca, Rachel Thompson, Francisco Castellanos, James Priest, Charlotte Cunningham-Rundles, Ayushi Hegde, Ruth C. Lovering, Catherine Hajek, Annie Olry, Luigi Notarangelo, Morgan Similuk, Xingmin Aaron Zhang, David Gómez-Andrés, Hanns Lochmüller, Hélène Dollfus, Sergio Rosenzweig, Shruti Marwaha, Ana Rath, Kathleen Sullivan, Cynthia L. Smith, Joshua D. Milner, Dorothée Leroux, Cornelius F. Boerkoel, Amy Klion, Melody C. Carter, Tudor Groza, Damian Smedley, Melissa A. Haendel, Chris Mungall, Peter N. Robinson:
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. Nucleic Acids Res. 47(Database-Issue): D1018-D1027 (2019)
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Robert Stevens, Phillip Lord, James Malone, Nicolas Matentzoglu:
Measuring expert performance at manually classifying domain entities under upper ontology classes. J. Web Semant. 57 (2019)
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Markel Vigo, Nicolas Matentzoglu, Caroline Jay, Robert Stevens:
Comparing ontology authoring workflows with Protégé: In the laboratory, in the tutorial and in the 'wild'. J. Web Semant. 57 (2019)
[c23]
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Leigh C. Carmody, Xingmin Aaron Zhang, Nicole A. Vasilevsky, Christopher J. Mungall, Nicolas Matentzoglu, Peter N. Robinson:
Medical Action Ontology (MAxO). ICBO 2019: 1
[c22]
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Henriette Harmse, Mélanie Courtot, Warren Read, Nicolas Matentzoglu, David Osumi-Sutherland, Simon Jupp:
Where Does an Ontology Start? ICBO 2019: 1
2018
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Nicolas Matentzoglu, James Malone, Chris Mungall, Robert Stevens:
MIRO: guidelines for minimum information for the reporting of an ontology. J. Biomed. Semant. 9(1): 6:1-6:13 (2018)
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Nicolas Matentzoglu, Bijan Parsia, Uli Sattler:
OWL Reasoning: Subsumption Test Hardness and Modularity. J. Autom. Reason. 60(4): 385-419 (2018)
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Nicolas Matentzoglu, Markel Vigo, Caroline Jay, Robert Stevens:
Inference Inspector: Improving the verification of ontology authoring actions. J. Web Semant. 49: 1-15 (2018)
[c21]
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Nicolas Matentzoglu, David Osumi-Sutherland:
Reconciling Ontology Definitions using the Ontology Pattern Reconciliation Workbench and the DOSDP Framework. ICBO 2018
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Markel Vigo, Nicolas Matentzoglu, Caroline Jay, Robert Stevens:
Log data generated by Protege in three settings: the laboratory, the tutorial and the remote study. Zenodo, 2018
[i1]
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Robert Stevens, Phillip Lord, James Malone, Nicolas Matentzoglu:
Measuring Expert Performance at Manually Classifying Domain Entities under Upper Ontology Classes. CoRR abs/1810.05093 (2018)
2017
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Bijan Parsia, Nicolas Matentzoglu, Rafael S. Gonçalves, Birte Glimm, Andreas Steigmiller:
The OWL Reasoner Evaluation (ORE) 2015 Competition Report. J. Autom. Reason. 59(4): 455-482 (2017)
2016
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Nicolas Matentzoglu:
Module-based classification of OWL ontologies. University of Manchester, UK, 2016
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Nicolas Matentzoglu, Markel Vigo, Caroline Jay, Robert Stevens:
Making Entailment Set Changes Explicit Improves the Understanding of Consequences of Ontology Authoring Actions. EKAW 2016: 432-446
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Jeff Z. Pan, Nicolas Matentzoglu, Caroline Jay, Markel Vigo, Yuting Zhao:
Understanding Author Intentions: Test Driven Knowledge Graph Construction. RW 2016: 1-26
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Bijan Parsia, Nicolas Matentzoglu, Rafael S. Gonçalves, Birte Glimm, Andreas Steigmiller:
The OWL Reasoner Evaluation (ORE) 2015 Resources. ISWC (2) 2016: 159-167
2015
[c17]
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Nicolas Matentzoglu, Uli Sattler, Bijan Parsia:
Empirical Investigation of Subsumption Test Hardness in Description Logic Classification. Description Logics 2015
[c16]
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Michael Lee, Nicolas Matentzoglu, Uli Sattler, Bijan Parsia:
Verifying Reasoner Correctness - A Justication Based Method. ORE 2015: 46-52
[c15]
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Nicolas Matentzoglu, Jared Leo, Valentino Hudhra, Uli Sattler, Bijan Parsia:
A Survey of Current, Stand-alone OWL Reasoners. ORE 2015: 68-79
[c14]
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Bijan Parsia, Nicolas Matentzoglu, Rafael S. Gonçalves, Birte Glimm, Andreas Steigmiller:
The OWL Reasoner Evaluation (ORE) 2015 Competition Report. SSWS@ISWC 2015: 2-15
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Michael Lee, Nicolas Matentzoglu, Bijan Parsia, Uli Sattler:
A Multi-reasoner, Justification-Based Approach to Reasoner Correctness. ISWC (2) 2015: 393-408
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Michel Dumontier, Birte Glimm, Rafael S. Gonçalves, Matthew Horridge, Ernesto Jiménez-Ruiz, Nicolas Matentzoglu, Bijan Parsia, Giorgos B. Stamou, Giorgos Stoilos:
Informal Proceedings of the 4th International Workshop on OWL Reasoner Evaluation (ORE-2015) co-located with the 28th International Workshop on Description Logics (DL 2015), Athens, Greece, June 6, 2015. CEUR Workshop Proceedings 1387, CEUR-WS.org 2015 [contents]
2014
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Mercedes Argüello Casteleiro, Nicolas Matentzoglu, Bijan Parsia, Sebastian Brandt:
Computable Declarative Representation of Clinical Assessment Scales in EHRs. CBMS 2014: 341-346
[c11]
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Nicolas Matentzoglu, Bijan Parsia, Uli Sattler:
An Empirical Investigation of Difficulty of Subsets of Description Logic Ontologies. Description Logics 2014: 659-670
[c10]
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Robert Stevens, Nicolas Matentzoglu, Uli Sattler, Margaret Stevens:
A Family History Knowledge Base in OWL 2. ORE 2014: 71-76
[c9]
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Nicolas Matentzoglu, Bijan Parsia:
OWL/ZIP: Distributing Large and Modular Ontologies. OWLED 2014: 37-48
[c8]
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Nicolas Matentzoglu, Bijan Parsia:
The OWL Full/DL Gap in the Field. OWLED 2014: 49-60
[c7]
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Nicolas Matentzoglu, Daniel Tang, Bijan Parsia, Uli Sattler:
The Manchester OWL Repository: System Description. ISWC (Posters & Demos) 2014: 285-288
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Samantha Bail, Birte Glimm, Ernesto Jiménez-Ruiz, Nicolas Matentzoglu, Bijan Parsia, Andreas Steigmiller:
Informal Proceedings of the 3rd International Workshop on OWL Reasoner Evaluation (ORE 2014) co-located with the Vienna Summer of Logic (VSL 2014), Vienna, Austria, July 13, 2014. CEUR Workshop Proceedings 1207, CEUR-WS.org 2014 [contents]
2013
[c6]
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Rafael S. Gonçalves, Nicolas Matentzoglu, Bijan Parsia, Uli Sattler:
The Empirical Robustness of Description Logic Classification. Description Logics 2013: 197-208
[c5]
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Nicolas Matentzoglu, Samantha Bail, Bijan Parsia:
A Corpus of OWL DL Ontologies. Description Logics 2013: 829-841
[c4]
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Rafael S. Gonçalves, Samantha Bail, Ernesto Jiménez-Ruiz, Nicolas Matentzoglu, Bijan Parsia, Birte Glimm, Yevgeny Kazakov:
OWL Reasoner Evaluation (ORE) Workshop 2013 Results: Short Report. ORE 2013: 1-18
[c3]
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Rafael S. Gonçalves, Nicolas Matentzoglu, Bijan Parsia, Uli Sattler:
The Empirical Robustness of Description Logic Classification. ISWC (Posters & Demos) 2013: 277-280
[c2]
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Nicolas Matentzoglu, Samantha Bail, Bijan Parsia:
A Snapshot of the OWL Web. ISWC (1) 2013: 331-346
[c1]
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Mercedes Argüello Casteleiro, Nicolas Matentzoglu, Bijan Parsia, Sebastian Brandt:
Computable Declarative Representation of Clinical Assessment Scales in EHRs. SWAT4LS 2013
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Samantha Bail, Birte Glimm, Rafael S. Gonçalves, Ernesto Jiménez-Ruiz, Yevgeny Kazakov, Nicolas Matentzoglu, Bijan Parsia:
Informal Proceedings of the 2nd International Workshop on OWL Reasoner Evaluation (ORE-2013), Ulm, Germany, July 22, 2013. CEUR Workshop Proceedings 1015, CEUR-WS.org 2013 [contents]

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