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ORCIDJason E. McDermott
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2020 – today
- 2021
[j23]Song Feng
, Emily Heath, Brett A. Jefferson, Cliff A. Joslyn, Henry Kvinge, Hugh D. Mitchell, Brenda Praggastis, Amie J. Eisfeld, Amy C. Sims, Larissa B. Thackray, Shufang Fan, Kevin B. Walters, Peter J. Halfmann, Danielle Westhoff-Smith, Qing Tan, Vineet D. Menachery, Timothy P. Sheahan, Adam S. Cockrell, Jacob F. Kocher, Kelly G. Stratton, Natalie C. Heller, Lisa M. Bramer, Michael S. Diamond, Ralph S. Baric, Katrina M. Waters, Yoshihiro Kawaoka, Jason E. McDermott, Emilie Purvine:
Hypergraph models of biological networks to identify genes critical to pathogenic viral response. BMC Bioinform. 22(1): 287 (2021)- 2020
- [j22]John S. Tregoning, Jason E. McDermott:
Ten Simple Rules to becoming a principal investigator. PLoS Comput. Biol. 16(2) (2020)
2010 – 2019
- 2019
- [j21]Ryan S. McClure, Jason P. Wendler, Joshua N. Adkins, Jesica Swanstrom, Ralph S. Baric, Brooke L. Deatherage Kaiser, Kristie L. Oxford, Katrina M. Waters, Jason E. McDermott:
Unified feature association networks through integration of transcriptomic and proteomic data. PLoS Comput. Biol. 15(9) (2019) - [c11]Marco Minutoli, Mahantesh Halappanavar, Ananth Kalyanaraman, Arun V. Sathanur, Ryan S. McClure, Jason E. McDermott:
Fast and Scalable Implementations of Influence Maximization Algorithms. CLUSTER 2019: 1-12 - 2018
- [j20]Jason E. McDermott, Matthew Partridge, Yana Bromberg:
Ten simple rules for drawing scientific comics. PLoS Comput. Biol. 14(1) (2018) - 2016
- [j19]Jason E. McDermott, Hugh D. Mitchell, Lisa E. Gralinski, Amie J. Eisfeld, Laurence Josset, Armand Bankhead III, Gabriele Neumann, Susan C. Tilton, Alexandra Schäfer, Chengjun Li, Shufang Fan, Shannon K. McWeeney, Ralph S. Baric, Michael G. Katze, Katrina M. Waters:
The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus. BMC Syst. Biol. 10: 93 (2016) - 2015
- [i1]Jason E. McDermott, Paul J. Bruillard, Christopher C. Overall, Luke J. Gosink, Stephen R. Lindemann:
Prediction of multi-drug resistance transporters using a novel sequence analysis method. F1000Research 4: 60 (2015) - 2014
- [j18]Seunghwa Kang, Simon Kahan, Jason E. McDermott, Nicholas S. Flann, Ilya Shmulevich:
Biocellion: accelerating computer simulation of multicellular biological system models. Bioinform. 30(21): 3101-3108 (2014) - [c10]Jason E. McDermott:
Promises and challenges in analysis of biological big data. BCB 2014: 680 - 2013
- [j17]Jason E. McDermott:
Reproducibility: Two more red flags for suspect work. Nat. 499(7458): 284 (2013) - [c9]Ryan Hafen, Luke J. Gosink, Jason E. McDermott, Karin Rodland, Kerstin Kleese van Dam, William S. Cleveland:
Trelliscope: A system for detailed visualization in the deep analysis of large complex data. LDAV 2013: 105-112 - 2012
- [j16]Jason E. McDermott, Deborah L. Diamond, Courtney D. Corley, Angela L. Rasmussen, Michael G. Katze, Katrina M. Waters:
Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis. BMC Syst. Biol. 6: 28 (2012) - [j15]Michelle Archuleta, Jason E. McDermott, Jeremy S. Edwards, Haluk Resat:
An Adaptive Coarse Graining Method for Signal Transduction in Three Dimensions. Fundam. Informaticae 118(4): 371-384 (2012) - [j14]George K. Acquaah-Mensah, Deepti Malhotra, Madhulika Vulimiri, Jason E. McDermott, Shyam Biswal:
Suppressed Expression of T-Box Transcription Factors Is Involved in Senescence in Chronic Obstructive Pulmonary Disease. PLoS Comput. Biol. 8(7) (2012) - [j13]Jason E. McDermott, Kenneth D. Jarman, Ronald C. Taylor, Mary J. Lancaster, Harish Shankaran, Keri B. Vartanian, Susan L. Stevens, Mary P. Stenzel-Poore, Antonio Sanfilippo:
Modeling Dynamic Regulatory Processes in Stroke. PLoS Comput. Biol. 8(10) (2012) - [c8]Antonio Sanfilippo, Jereme N. Haack, Jason E. McDermott, Susan L. Stevens, Mary P. Stenzel-Poore:
Modeling Emergence in Neuroprotective Regulatory Networks. Complex 2012: 291-302 - [c7]Jason E. McDermott, Pascal Braun, Richard Bonneau, Daniel R. Hyduke:
Session introduction. Pacific Symposium on Biocomputing 2012: 283-286 - 2011
- [j12]Hyunjin Yoon, Charles Ansong, Jason E. McDermott, Marina A. Gritsenko, Richard D. Smith, Fred Heffron, Joshua N. Adkins:
Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella. BMC Syst. Biol. 5: 100 (2011) - [j11]Jason E. McDermott, Harish Shankaran, Amie J. Eisfeld, Sarah E. Belisle, Gabriele Neumann, Chengjun Li, Shannon K. McWeeney, Carol Sabourin, Yoshihiro Kawaoka, Michael G. Katze, Katrina M. Waters:
Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems. BMC Syst. Biol. 5: 190 (2011) - [j10]Ronald C. Taylor, Antonio Sanfilippo, Jason E. McDermott, Bob Baddeley, Roderick M. Riensche, Russ Jensen, Marc Verhagen, James Pustejovsky:
Enriching regulatory networks by bootstrap learning using optimised GO-based gene similarity and gene links mined from PubMed abstracts. Int. J. Comput. Biol. Drug Des. 4(1): 56-82 (2011) - [c6]Jason E. McDermott, Michelle Archuleta, Susan L. Stevens, Mary P. Stenzel-Poore, Antonio Sanfilippo:
Defining the Players in Higher-Order Networks: Predictive Modeling for Reverse Engineering Functional Influence Networks. Pacific Symposium on Biocomputing 2011: 314-325 - 2010
- [j9]Jun Wang, Jianguo Zhang, Ruiqiang Li, Hongkun Zheng, Jun Li, Yong Zhang, Heng Li, Peixiang Ni, Songgang Li, Shengting Li, Jingqiang Wang, Dongyuan Liu, Jason E. McDermott, Ram Samudrala, Siqi Liu, Jian Wang, Huanming Yang, Jun Yu, Gane Ka-Shu Wong:
Evolutionary Transients in the Rice Transcriptome. Genom. Proteom. Bioinform. 8(4): 211-228 (2010) - [c5]Jason E. McDermott, Bob Baddeley, Susan L. Stevens, Antonio Sanfilippo, Rick Riensche, Mary P. Stenzel-Poore, Ronald C. Taylor, Russ Jensen:
An integrated approach to predictive genomic analytics. BCB 2010: 390-393 - [c4]Ronald C. Taylor, Bob Baddeley, Antonio Sanfilippo, Rick Riensche, Marc Verhagen, Jason E. McDermott, Russ Jensen:
Learning biological networks via bootstrapping with optimized go-based gene similarity. BCB 2010: 515-519
2000 – 2009
- 2009
- [j8]Antonio Sanfilippo, Bob Baddeley, Nathaniel Beagley, Jason E. McDermott, Roderick M. Riensche, Ronald C. Taylor, Banu Gopalan:
Using the gene ontology to enrich biological pathways. Int. J. Comput. Biol. Drug Des. 2(3): 221-235 (2009) - [j7]Ronald C. Taylor, Mudita Singhal, Don Simone Daly, Jason M. Gilmore, William R. Cannon, Kelly Domico, Amanda M. White, Deanna L. Auberry, Kenneth J. Auberry, Brian Hooker, Gregory B. Hurst, Jason E. McDermott, W. Hayes McDonald, Dale Pelletier, Denise Schmoyer, H. Steven Wiley:
An analysis pipeline for the inference of protein-protein interaction networks. Int. J. Data Min. Bioinform. 3(4): 409-430 (2009) - [j6]Jason E. McDermott, Ronald C. Taylor, Hyunjin Yoon, Fred Heffron:
Bottlenecks and Hubs in Inferred Networks Are Important for Virulence in Salmonella typhimurium. J. Comput. Biol. 16(2): 169-180 (2009) - [c3]Tom Barker, Matthias Hank Haeusler, Frank Maguire, Jason E. McDermott:
Investigating political and demographic factors in crowd based interfaces. OZCHI 2009: 413-416 - [c2]Bobbie-Jo M. Webb-Robertson, Lee Ann McCue, Nathaniel Beagley, Jason E. McDermott, David S. Wunschel, Susan M. Varnum, Jian Zhi Hu, Nancy G. Isern, Garry W. Buchko, Kathleen McAteer, Joel G. Pounds:
A Bayesian Integration Model of High-Throughput Proteomics and Metabolomics Data for Improved Early Detection of Microbial Infections. Pacific Symposium on Biocomputing 2009: 451-463 - 2007
- [c1]Ronald C. Taylor, Mudita Singhal, Don Simone Daly, Kelly Domico, Amanda M. White, Deanna L. Auberry, Kenneth J. Auberry, Brian Hooker, Gregory B. Hurst, Jason E. McDermott, W. Hayes McDonald, Dale Pelletier, Denise Schmoyer, William R. Cannon:
SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction. ICMLA 2007: 587-593 - 2006
- [j5]Aaron N. Chang, Jason E. McDermott, Zachary Frazier, Michal Guerquin, Ram Samudrala:
INTEGRATOR: interactive graphical search of large protein interactomes over the Web. BMC Bioinform. 7: 146 (2006) - 2005
- [j4]Aaron N. Chang, Jason E. McDermott, Ram Samudrala:
An enhanced Java graph applet interface for visualizing interactomes. Bioinform. 21(8): 1741-1742 (2005) - [j3]Jason E. McDermott, Roger Eugene Bumgarner, Ram Samudrala:
Functional annotation from predicted protein interaction networks. Bioinform. 21(15): 3217-3226 (2005) - [j2]Jason E. McDermott, Michal Guerquin, Zachary Frazier, Aaron N. Chang, Ram Samudrala:
BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes. Nucleic Acids Res. 33(Web-Server-Issue): 324-325 (2005) - 2003
- [j1]Jason E. McDermott, Ram Samudrala:
Bioverse: functional, structural and contextual annotation of proteins and proteomes. Nucleic Acids Res. 31(13): 3736-3737 (2003)
Coauthor Index
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