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Mark Borodovsky
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- affiliation: Georgia Institute of Technology, Atlanta, USA
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2020 – today
- 2021
- [j25]Lars Gabriel, Katharina Jasmin Hoff, Tomás Bruna, Mark Borodovsky, Mario Stanke:
TSEBRA: transcript selector for BRAKER. BMC Bioinform. 22(1): 566 (2021) - [j24]Karl Gemayel, Alexandre Lomsadze, Mark Borodovsky:
StartLink and StartLink+: Prediction of Gene Starts in Prokaryotic Genomes. Frontiers Bioinform. 1 (2021)
2010 – 2019
- 2019
- [j23]Ivan V. Antonov, Evgeny Mazurov, Mark Borodovsky, Yulia A. Medvedeva:
Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools. Briefings Bioinform. 20(2): 551-564 (2019) - [c10]Mark Borodovsky:
New Machine Learning Algorithms for Genome Annotation. BCB 2019: 1 - 2017
- [c9]Mark Borodovsky:
New automatic and effective tools for genome annotation. ICCABS 2017: 1 - 2016
- [j22]Katharina Jasmin Hoff, Simone Lange, Alexandre Lomsadze, Mark Borodovsky, Mario Stanke:
BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS. Bioinform. 32(5): 767-769 (2016) - 2014
- [c8]Shiyuyun Tang, Alexandre Lomsadze, Mark Borodovsky:
Identification of protein coding regions in RNA transcripts. BCB 2014: 588 - 2013
- [j21]Shiyuyun Tang, Ivan Antonov, Mark Borodovsky:
MetaGeneTack: ab initio detection of frameshifts in metagenomic sequences. Bioinform. 29(1): 114-116 (2013) - [j20]Ivan Antonov, Pavel V. Baranov, Mark Borodovsky:
GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences. Nucleic Acids Res. 41(Database-Issue): 152-156 (2013) - 2012
- [c7]Yang Li, Hong-Mei Li, Paul Burns, Mark Borodovsky, Gene E. Robinson, Jian Ma:
TrueSight: Self-training Algorithm for Splice Junction Detection Using RNA-seq. RECOMB 2012: 163-164 - 2011
- [j19]Mark Borodovsky, Teresa M. Przytycka, Sanguthevar Rajasekaran, Alexander Zelikovsky:
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 8(4): 865-866 (2011) - 2010
- [j18]Jeffrey Martin, Wenhan Zhu, Karla D. Passalacqua, Nicholas H. Bergman, Mark Borodovsky:
Bacillus anthracis genome organization in light of whole transcriptome sequencing. BMC Bioinform. 11(S-3): 10 (2010) - [j17]Ivan Antonov, Mark Borodovsky:
Genetack: frameshift Identification in protein-Coding Sequences by the Viterbi Algorithm. J. Bioinform. Comput. Biol. 8(3): 535-551 (2010) - [e2]Aidong Zhang, Mark Borodovsky, Gultekin Özsoyoglu, Armin R. Mikler:
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, BCB 2010, Niagara Falls, NY, USA, August 2-4, 2010. ACM 2010, ISBN 978-1-4503-0438-2 [contents] - [e1]Mark Borodovsky, Johann Peter Gogarten, Teresa M. Przytycka, Sanguthevar Rajasekaran:
Bioinformatics Research and Applications, 6th International Symposium, ISBRA 2010, Storrs, CT, USA, May 23-26, 2010. Proceedings. Lecture Notes in Computer Science 6053, Springer 2010, ISBN 978-3-642-13077-9 [contents]
2000 – 2009
- 2009
- [j16]Andrey Kislyuk, Alexandre Lomsadze, Alla L. Lapidus, Mark Borodovsky:
Frameshift detection in prokaryotic genomic sequences. Int. J. Bioinform. Res. Appl. 5(4): 458-477 (2009) - [c6]Jeffrey Martin, Wenhan Zhu, Nicholas H. Bergman, Mark Borodovsky:
Assessment of Gene Annotation Accuracy by Inferring Transcripts from RNA-Seq. BIBM 2009: 54-59 - 2007
- [c5]Mark Borodovsky:
Decoding Novel Genomes: From Microbiomes to the Eukaryota. BIBE 2007: 3 - [c4]Mark Borodovsky:
Invited Talk: Ab Initio Gene Finding Engines: What Is Under the Hood. ISBRA 2007: 577 - 2006
- [j15]Alexander Yu. Mitrophanov, Mark Borodovsky:
Statistical significance in biological sequence analysis. Briefings Bioinform. 7(1): 2-24 (2006) - [j14]Zafer Aydin, Yucel Altunbasak, Mark Borodovsky:
Protein secondary structure prediction for a single-sequence using hidden semi-Markov models. BMC Bioinform. 7: 178 (2006) - [j13]Seoung Bum Kim, Kwok-Leung Tsui, Mark Borodovsky:
Multiple testing in large-scale contingency tables: inferring patterns of pair-wise amino acid association in beta-sheets. Int. J. Bioinform. Res. Appl. 2(2): 193-217 (2006) - [j12]Svetlana Ekisheva, Mark Borodovsky:
Probabilistic models for biological sequences: selection and Maximum Likelihood estimation. Int. J. Bioinform. Res. Appl. 2(3): 305-324 (2006) - 2005
- [j11]Mark Borodovsky, Andrey Rzhetsky, Dmitrij Frishman:
The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics: in silico Biology, Computational Genomics and Evolutionary Biology. Bioinform. 21(S3): 1 (2005) - [j10]John Besemer, Mark Borodovsky:
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 33(Web-Server-Issue): 451-454 (2005) - [c3]Jin Hong, Dong Hyun Jeong, Christopher D. Shaw, William Ribarsky, Mark Borodovsky, Chang Geun Song:
GVis: A Scalable Visualization Framework for Genomic Data. EuroVis 2005: 191-198 - 2004
- [j9]Rajeev K. Azad, Mark Borodovsky:
Probabilistic methods of identifying genes in prokaryotic genomes: Connections to the HMM theory. Briefings Bioinform. 5(2): 118-130 (2004) - [j8]Rajeev K. Azad, Mark Borodovsky:
Effects of choice of DNA sequence model structure on gene identification accuracy. Bioinform. 20(7): 993-1005 (2004) - [c2]Zafer Aydin, Yücel Altunbasak, Mark Borodovsky:
Protein secondary structure prediction with semi Markov HMMs. ICASSP (5) 2004: 577-580 - 2001
- [j7]Mark Borodovsky, Eugene V. Koonin, Chris Burge, James W. Fickett, John Logsdon, Andrej Sali, Gary D. Stormo, Igor B. Zhulin:
The Third Georgia Tech-Emory International Conference on Bioinformatics: In Silico Biology; Bioinformatics After Human Genome (November 15-18, 2001, Atlanta, Georgia, USA). Bioinform. 17(10): 859-861 (2001)
1990 – 1999
- 1999
- [j6]Chris Burge, Andrej Sali, Mark Borodovsky:
The Second Georgia Tech International Conference on Bioinformatics: Sequence, Structure and Function (November 11-14, 1999, Atlanta, Georgia, USA). Bioinform. 15(11): 865-866 (1999) - [j5]Anton M. Shmatkov, Arik A. Melikyan, Felix L. Chernousko, Mark Borodovsky:
Finding prokaryotic genes by the 'frame-by-frame' algorithm: targeting gene starts and overlapping genes. Bioinform. 15(11): 874-886 (1999) - 1996
- [j4]Jürgen Kleffe, Klaus Hermann, Mark Borodovsky:
Statistical Analysis of Genemark Performance by Cross-validation. Comput. Chem. 20(1): 123-133 (1996) - [c1]James D. McIninch, William S. Hayes, Mark Borodovsky:
Applications of GeneMark in Multispecies Environments. ISMB 1996: 165-175 - 1994
- [j3]Mark Borodovsky, Anatoly Peresetsky:
Deriving Non-homogeneous DNA Markov Chain Models by Cluster Analysis Algorithm Minimizing Multiple Alignment Entropy. Comput. Chem. 18(3): 259-267 (1994) - 1993
- [j2]Mark Borodovsky, James D. McIninch:
GENMARK: Parallel Gene Recognition for Both DNA Strands. Comput. Chem. 17(2): 123-133 (1993) - 1992
- [j1]Jürgen Kleffe, Mark Borodovsky:
First and second moment of counts of words in random texts generated by Markov chains. Comput. Appl. Biosci. 8(5): 433-441 (1992)
Coauthor Index
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