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ORCIDInternational Journal of Data Mining and Bioinformatics, Volume 4
Volume 4, Number 1, 2010
- Alessandro Dal Palù
, Agostino Dovier, Enrico Pontelli:
Computing approximate solutions of the protein structure determination problem using global constraints on discrete crystal lattices. 1-20 - Fadi Towfic, Cornelia Caragea, David C. Gemperline, Drena Dobbs, Vasant G. Honavar:
Struct-NB: predicting protein-RNA binding sites using structural features. 21-43 - Dongxiao Zhu, Hua Li:
Improved Bayesian Network inference using relaxed gene ordering. 44-59 - Jia Song, Chunmei Liu, Yinglei Song, Junfeng Qu, Gurdeep S. Hura:
Alignment of multiple proteins with an ensemble of Hidden Markov Models. 60-71 - Andrew V. Kossenkov, Michael F. Ochs:
Matrix factorisation methods applied in microarray data analysis. 72-90 - Min Li, Jianxin Wang, Jianer Chen, Zhao Cai, Gang Chen:
Identifying the overlapping complexes in protein interaction networks. 91-108 - Xiajiong Shen, Jun Gu:
Integrating flexibility and interactivity in bioinformatics visual programming tools with Focus+Context algorithm. 109-122
Volume 4, Number 2, 2010
- Mingzhou (Joe) Song, Robert M. Haralick, Stéphane Boissinot:
Efficient and exact maximum likelihood quantisation of genomic features using dynamic programming. 123-141 - Huilin Xiong, Ya Zhang, Xue-wen Chen, Jiangsheng Yu:
Cross-platform microarray data integration using the Normalised Linear Transform. 142-157 - Mahmood A. Mahdavi:
Medical informatics: transition from data acquisition to data analysis by means of bioinformatics tools and resources. 158-174 - Sumeet Dua, Praveen C. Kidambi:
Protein structural classification using orthogonal transformation and class-association rules. 175-190 - Andrew Secker, Matthew N. Davies, Alex Alves Freitas, Edward Clark, Jonathan Timmis, Darren R. Flower:
Hierarchical classification of G-Protein-Coupled Receptors with data-driven selection of attributes and classifiers. 191-210 - Qiwen Dong, Shuigeng Zhou, Xuan Liu:
Prediction of protein - protein interactions from primary sequences. 211-227 - Fengbin Zheng, Xiajiong Shen, Zhengye Fu, Shanshan Zheng, Guangrong Li:
Feature selection for genomic data sets through feature clustering. 228-240
Volume 4, Number 3, 2010
- Jiao Li, Xiaoyan Zhu, Jake Yue Chen:
Discovering breast cancer drug candidates from biomedical literature. 241-255 - Sérgio Manuel Serra da Cruz, Vanessa Batista, Edno Silva, Frederico Tosta, Clarissa Vilela, Rafael R. C. Cuadrat, Diogo A. Tschoeke, Alberto M. R. Dávila, Maria Luiza Machado Campos, Marta Mattoso:
Detecting distant homologies on protozoans metabolic pathways using scientific workflows. 256-280 - Márcio Dorn, Osmar Norberto de Souza:
Mining the Protein Data Bank with CReF to predict approximate 3-D structures of polypeptides. 281-299 - Antonina Mitrofanova, Bud Mishra:
On a novel coalescent model for genome-wide evolution of Copy Number Variations. 300-315 - Bernard Chen, Jieyue He, Stephen Pellicer, Yi Pan:
Using Hybrid Hierarchical K-means (HHK) clustering algorithm for protein sequence motif Super-Rule-Tree (SRT) structure construction. 316-330 - Wai-Ki Ching, Limin Li, Nam-Kiu Tsing, Ching-Wan Tai, Tuen-Wai Ng, Alice S. Wong, Kwai-Wa Cheng:
A weighted Local Least Squares Imputation method for missing value estimation in microarray gene expression data. 331-347 - Yi Zhang, Dingding Wang, Tao Li:
LIBGS: A MATLAB software package for gene selection. 348-355
Volume 4, Number 4, 2010
- Gyan Prakash Srivastava, Jing Qiu, Dong Xu:
Genome-wide functional annotation by integrating multiple microarray datasets using meta-analysis. 357-376 - Vinhthuy Phan, Sudip Saha, Ashutosh Pandey, Tit-Yee Wong:
Synthetic gene design with a large number of hidden stops. 377-394 - Alex Rudniy, Min Song, James Geller:
Detecting duplicate biological entities using Shortest Path Edit Distance. 395-410 - Jing Xia, Doina Caragea, Susan J. Brown:
Prediction of alternatively spliced exons using Support Vector Machines. 411-430 - Jeffrey D. Leblond, Andrew D. Lasiter, Cen Li, Ramiro Logares, Karin Rengefors, Terence J. Evens:
A data mining approach to dinoflagellate clustering according to sterol composition: correlations with evolutionary history. 431-451 - Seak Fei Lei, Jun Huan:
Towards site-based protein functional annotations. 452-470 - Md. Nurul Haque Mollah, Shinto Eguchi:
Robust QTL analysis by minimum beta-divergence method. 471-485
Volume 4, Number 5, 2010
- Saira Ali Kazmi, Yoo-Ah Kim, Dong-Guk Shin:
Meta analysis algorithms for microarray gene expression data using Gene Regulatory Networks. 487-504 - Baikang Pei, David W. Rowe, Dong-Guk Shin:
Learning Bayesian networks with integration of indirect prior knowledge. 505-519 - Zheng Chen, Jian Tang:
Using Gene Ontology to enhance effectiveness of similarity measures for microarray data. 520-534 - Rachel Caldwell, Yan-Xia Lin, Ren Zhang:
Assessment of length distributions between non-coding and coding sequences amongst two model organisms. 535-552 - Jamil Ahmad, Olivier F. Roux:
Invariance kernel of Biological Regulatory Networks. 553-570 - Hong Yang, Rajshekhar Sunderraman, Hao Tian:
bcnQL: A query language for biochemical networks. 571-587 - Hyojin Kang, Eunkyoo Oh, Giltsu Choi, Doheon Lee:
Genome-wide DNA-binding specificity of PIL5, an Arabidopsis basic Helix-Loop-Helix (bHLH) transcription factor. 588-599 - Liang Yu, Lin Gao, Peng-Gang Sun:
A hybrid clustering algorithm for identifying modules in Protein - Protein Interaction networks. 600-615
Volume 4, Number 6, 2010
- Haixia Li, R. Krishna Murthy Karuturi:
Significance analysis and improved discovery of disease-specific Differentially Co-expressed Gene Sets in microarray data. 617-638 - Hui Liu, Shuigeng Zhou, Jihong Guan:
Detecting microarray data supported microRNA-mRNA interactions. 639-655 - Dietmar H. Dorr, Anne M. Denton:
Generalised Sequence Signatures through symbolic clustering. 656-674 - Niina Haiminen, Heikki Mannila:
Evaluation of BIC and Cross Validation for model selection on sequence segmentations. 675-700 - Levent Çarkacioglu, Rengül Çetin-Atalay, Özlen Konu, Volkan Atalay, Tolga Can:
Bi-k-bi clustering: mining large scale gene expression data using two-level biclustering. 701-721 - Peng Chen, Chunmei Liu, Legand L. Burge III, Mahmood Mohammad, William M. Southerland, Clay Gloster:
Prediction of inter-residue contact clusters from hydrophobic cores. 722-734 - Satu Jääskeläinen, Pentti Riikonen, Tapio Salakoski, Mauno Vihinen:
Accuracy of protein hydropathy predictions. 735-754
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