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ORCIDIWBBIO 2019: Granada, Spain
- Ignacio Rojas, Olga Valenzuela, Fernando Rojas
, Francisco M. Ortuño Guzman:
Bioinformatics and Biomedical Engineering - 7th International Work-Conference, IWBBIO 2019, Granada, Spain, May 8-10, 2019, Proceedings, Part I. Lecture Notes in Computer Science 11465, Springer 2019, ISBN 978-3-030-17937-3
High-throughput Genomics: Bioinformatic Tools and Medical Applications
- Antonio Mucherino, Jung-Hsin Lin, Douglas Soares Gonçalves:
A Coarse-Grained Representation for Discretizable Distance Geometry with Interval Data. 3-13 - Eka Gunarti Ningsih, Muhammad Fauzi Hidayat, Usman Sumo Friend Tambunan:
Fragment-Based Drug Design to Discover Novel Inhibitor of Dipeptidyl Peptidase-4 (DPP-4) as a Potential Drug for Type 2 Diabetes Therapy. 14-24 - Yulianti, Agustinus Corona Boraelis Kantale, Usman Sumo Friend Tambunan:
Discovery of Novel Alpha-Amylase Inhibitors for Type II Diabetes Mellitus Through the Fragment-Based Drug Design. 25-35 - Guillermo Dufort y Álvarez, Gadiel Seroussi, Pablo Smircich, José Sotelo, Idoia Ochoa, Álvaro Martín:
Compression of Nanopore FASTQ Files. 36-47 - José Córdoba-Caballero, Pedro Seoane-Zonjic, Manuel Manchado, M. Gonzalo Claros:
De novo Transcriptome Assembly of Solea senegalensis v5.0 Using TransFlow. 48-59 - Javaria Ashraf, Jamil Ahmad, Zaheer-ul-Haq:
Deciphering the Role of PKC in Calpain-CAST System Through Formal Modeling Approach. 60-71 - Bing Feng, Ying-Yong Zhao, Jiexi Wang, Hui Yu, Shiva Potu, Jiandong Wang, Jijun Tang, Yan Guo:
The Application of Machine Learning Algorithms to Diagnose CKD Stages and Identify Critical Metabolites Features. 72-83 - Macarena Arroyo, Rafael Larrosa, M. Gonzalo Claros, Rocío Bautista:
Expression Change Correlations Between Transposons and Their Adjacent Genes in Lung Cancers Reveal a Genomic Location Dependence and Highlights Cancer-Significant Genes. 84-92 - Robin Jugas, Martin Vítek, Denisa Maderankova, Helena Skutkova:
Signal Processing Based CNV Detection in Bacterial Genomes. 93-102
Omics Data Acquisition, Processing, and Analysis
- Vladyslav Bozhynov, Pavel Soucek, Antonín Bárta, Pavla Urbanová, Dinara Bekkozhayeva:
Dependency Model for Visible Aquaphotomics. 105-115 - Dinara Bekkozhayeva, Mohammadmehdi Saberioon, Petr Císar:
Image Based Individual Identification of Sumatra Barb (Puntigrus Tetrazona). 116-119 - Simone Faro, Arianna Pavone:
Alignment of Sequences Allowing for Non-overlapping Unbalanced Translocations of Adjacent Factors. 120-131 - Jan Urban:
Probability in HPLC-MS Metabolomics. 132-141 - Pavla Urbanová, Vladyslav Bozhynov, Dinara Bekkozhayeva, Petr Císar, Milos Zelezný:
Pipeline for Electron Microscopy Images Processing. 142-153 - Chunyan Yang, Tian Zheng, Zhongmeng Zhao, Xinnuo He, Xuanping Zhang, Xiao Xiao, Jiayin Wang:
A Greedy Algorithm for Detecting Mutually Exclusive Patterns in Cancer Mutation Data. 154-165 - Tamara Slosarek, Milena Kraus, Matthieu-P. Schapranow, Erwin P. Böttinger:
Qualitative Comparison of Selected Indel Detection Methods for RNA-Seq Data. 166-177 - Elena Lima-Cabello, Isabel Martínez-Beas, Estefanía García-Quirós, Rosario Carmona, M. Gonzalo Claros, Jose Carlos Jimenez-Lopez, Juan de Dios Alché:
Structural and Functional Features of Glutathione Reductase Transcripts from Olive (Olea europaea L.) Seeds. 178-191
Bioinformatics Approaches for Analyzing Cancer Sequencing Data
- Jing Li, Pengfei Zhu, Quan Zou:
Prediction of Thermophilic Proteins Using Voting Algorithm. 195-203 - Xianli Zhang, Yinbin Zhang, Buyue Qian, Xiaotong Liu, Xiaoyu Li, Xudong Wang, Changchang Yin, Xin Lv, Lingyun Song, Liang Wang:
Classifying Breast Cancer Histopathological Images Using a Robust Artificial Neural Network Architecture. 204-215 - Feiqian Wang, Xiaotong Liu, Buyue Qian, Litao Ruan, Rongjian Zhao, Changchang Yin, Na Yuan, Rong Wei, Xin Ma, Jishang Wei:
Spatial Attention Lesion Detection on Automated Breast Ultrasound. 216-227 - Xiaoqin Yang, Xiujuan Lei, Jiayin Wang:
Essential Protein Detection from Protein-Protein Interaction Networks Using Immune Algorithm. 228-239 - Bolin Chen, Chaima Aouiche, Xuequn Shang:
Integrating Multiple Datasets to Discover Stage-Specific Cancer Related Genes and Stage-Specific Pathways. 240-250 - Feng Gao, Liwei Gao, Jing-Yang Gao:
Integrated Detection of Copy Number Variation Based on the Assembly of NGS and 3GS Data. 251-260 - Qing Liao, Mingyue Guo, Bin Liu:
Protein Remote Homology Detection Based on Profiles. 261-268
Next Generation Sequencing and Sequence Analysis
- Michael G. Sadovsky, Victory Kobets, Georgy Khodos, Dmitry A. Kuzmin, Vadim V. Sharov:
Reads in NGS Are Distributed over a Sequence Very Inhomogeneously. 271-282 - Almas Jabeen, Nadeem Ahmad, Khalid Raza:
Differential Expression Analysis of ZIKV Infected Human RNA Sequence Reveals Potential Genetic Biomarkers. 283-294 - Roberto Ahumada-García, Jorge González-Puelma, Diego Álvarez-Saravia, Ricardo J. Barrientos, Roberto Uribe Paredes, Xaviera A. López-Cortés, Marcelo A. Navarrete:
Identification of Immunoglobulin Gene Usage in Immune Repertoires Sequenced by Nanopore Technology. 295-306 - Simone Faro, Arianna Pavone:
Flexible and Efficient Algorithms for Abelian Matching in Genome Sequence. 307-318 - Eirini Stamoulakatou, Carlo Piccardi, Marco Masseroli:
Analysis of Gene Regulatory Networks Inferred from ChIP-seq Data. 319-331
Structural Bioinformatics and Function
- Michael G. Sadovsky, Victory Fedotovskaya, Anna Kolesnikova, Tatiana Shpagina, Yulia Putintseva:
Function vs. Taxonomy: The Case of Fungi Mitochondria ATP Synthase Genes. 335-345 - Michael G. Sadovsky, Maria Senashova, Inna Gorban, Vladimir Gustov:
Non-Coding Regions of Chloroplast Genomes Exhibit a Structuredness of Five Types. 346-355 - Michael T. Zimmermann, Fadi Towfic, Robert L. Jernigan, Andrzej Kloczkowski:
Characteristics of Protein Fold Space Exhibits Close Dependence on Domain Usage. 356-369 - Michael G. Sadovsky, Tatiana Guseva, Vladislav Biriukov:
Triplet Frequencies Implementation in Total Transcriptome Analysis. 370-378 - Vinício F. Mendes, Cleiton Rodrigues Monteiro, Giovanni V. Comarela, Sabrina de Azevedo Silveira:
A Hierarchical and Scalable Strategy for Protein Structural Classification. 379-390 - João Arthur F. Gadelha Campelo, Cleiton Rodrigues Monteiro, Carlos Henrique da Silveira, Sabrina de Azevedo Silveira, Raquel Cardoso de Melo Minardi:
Protein Structural Signatures Revisited: Geometric Linearity of Main Chains are More Relevant to Classification Performance than Packing of Residues. 391-402
Telemedicine for Smart Homes and Remote Monitoring
- Viacheslav E. Antsiperov, Gennady K. Mansurov:
Positioning Method for Arterial Blood Pressure Monitoring Wearable Sensor. 405-414 - Jose-Antonio Santoyo-Ramón, Eduardo Casilari-Pérez, José Manuel Cano-García:
Study of the Detection of Falls Using the SVM Algorithm, Different Datasets of Movements and ANOVA. 415-428 - Mislav Juric, Maksym Gaiduk, Ralf Seepold:
Influence of Illuminance on Sleep Onset Latency in IoT Based Lighting System Environment. 429-438
Clustering and Analysis of Biological Sequences with Optimization Algorithms
- Stéphane Chrétien, Christophe Guyeux:
Efficient Online Laplacian Eigenmap Computation for Dimensionality Reduction in Molecular Phylogeny via Optimisation on the Sphere. 441-452 - Rahul Semwal, Imlimaong Aier, Pritish Kumar Varadwaj, Slava Antsiperov:
PROcket, an Efficient Algorithm to Predict Protein Ligand Binding Site. 453-461 - Enzo Battistella, Maria Vakalopoulou, Théo Estienne, Marvin Lerousseau, Roger Sun, Charlotte Robert, Nikos Paragios, Eric Deutsch:
Gene Expression High-Dimensional Clustering Towards a Novel, Robust, Clinically Relevant and Highly Compact Cancer Signature. 462-474
Computational Approaches for Drug Repurposing and Personalized Medicine
- Somnath Tagore, Milana Frenkel-Morgenstern:
When Mathematics Outsmarts Cancer. 477-485 - Krzysztof Puszynski:
Influence of the Stochasticity in the Model on the Certain Drugs Pharmacodynamics. 486-497 - Suganya Chandrababu, Dhundy Bastola:
Graph Model for the Identification of Multi-target Drug Information for Culinary Herbs. 498-512 - Suyeon Kim, Ishwor Thapa, Ling Zhang, Hesham Ali:
On Identifying Candidates for Drug Repurposing for the Treatment of Ulcerative Colitis using Gene Expression Data. 513-521
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