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ORCIDLi-San Wang
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- affiliation: University of Pennsylvania, Philadelphia, USA
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2020 – today
- 2023
[j24]Jeffrey Cifello
, Pavel P. Kuksa, Naveensri Saravanan, Otto Valladares, Li-San Wang, Yuk Yee Leung:
hipFG: high-throughput harmonization and integration pipeline for functional genomics data. Bioinform. 39(11) (2023)- 2022
- [j23]Chixiang Chen, Yuk Yee Leung, Matei Ionita, Li-San Wang, Mingyao Li:
Omnibus and robust deconvolution scheme for bulk RNA sequencing data integrating multiple single-cell reference sets and prior biological knowledge. Bioinform. 38(19): 4530-4536 (2022) - 2020
- [j22]Pavel P. Kuksa, Chien-Yueh Lee, Alexandre Amlie-Wolf, Prabhakaran Gangadharan, Elizabeth E. Mlynarski, Yi-Fan Chou, Han-Jen Lin, Heather Issen, Emily Greenfest-Allen, Otto Valladares, Yuk Yee Leung, Li-San Wang:
SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants. Bioinform. 36(12): 3879-3881 (2020)
2010 – 2019
- 2019
- [j21]Pavel P. Kuksa, Alexandre Amlie-Wolf, Zivadin Katanic, Otto Valladares, Li-San Wang, Yuk Yee Leung:
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products. Bioinform. 35(6): 1033-1039 (2019) - [j20]Yuk Yee Leung, Otto Valladares, Yi-Fan Chou, Han-Jen Lin, Amanda Kuzma, Laura Cantwell, Liming Qu, William J. Salerno, Gerard D. Schellenberg, Li-San Wang:
VCPA: genomic variant calling pipeline and data management tool for Alzheimer's Disease Sequencing Project. Bioinform. 35(10): 1768-1770 (2019) - [j19]Yuk Yee Leung, Otto Valladares, Yi-Fan Chou, Han-Jen Lin, Amanda Kuzma, Laura Cantwell, Liming Qu, Prabhakaran Gangadharan, William J. Salerno, Gerard D. Schellenberg, Li-San Wang:
VCPA: genomic variant calling pipeline and data management tool for Alzheimer's Disease Sequencing Project. Bioinform. 35(11): 1985 (2019) - 2018
- [j18]Zilu Zhou, Weixin Wang, Li-San Wang, Nancy Ruonan Zhang:
Integrative DNA copy number detection and genotyping from sequencing and array-based platforms. Bioinform. 34(14): 2349-2355 (2018) - [j17]Mariusz Butkiewicz, Elizabeth E. Blue, Yuk Yee Leung, Xueqiu Jian, Edoardo Marcora, Alan E. Renton, Amanda Kuzma, Li-San Wang, Daniel C. Koboldt, Jonathan L. Haines, William S. Bush:
Functional annotation of genomic variants in studies of late-onset Alzheimer's disease. Bioinform. 34(16): 2724-2731 (2018) - [j16]Pavel P. Kuksa, Alexandre Amlie-Wolf, Zivadin Katanic, Otto Valladares, Li-San Wang, Yuk Yee Leung:
SPAR: small RNA-seq portal for analysis of sequencing experiments. Nucleic Acids Res. 46(Webserver-Issue): W36-W42 (2018) - 2016
- [j15]Nathan D. Berkowitz, Ian M. Silverman, Daniel M. Childress, Hilal Kazan, Li-San Wang, Brian D. Gregory:
A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer). BMC Bioinform. 17: 215 (2016) - [j14]Yuk Yee Leung, Pavel P. Kuksa, Alexandre Amlie-Wolf, Otto Valladares, Lyle H. Ungar, Sampath Kannan, Brian D. Gregory, Li-San Wang:
DASHR: database of small human noncoding RNAs. Nucleic Acids Res. 44(Database-Issue): 216-222 (2016) - 2015
- [j13]Yih-Chii Hwang, Chiao-Feng Lin, Otto Valladares, John Malamon, Pavel P. Kuksa, Qi Zheng, Brian D. Gregory, Li-San Wang:
HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements. Bioinform. 31(8): 1290-1292 (2015) - [j12]Siavash Mirarab, Nam Nguyen, Sheng Guo, Li-San Wang, Junhyong Kim, Tandy J. Warnow:
PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences. J. Comput. Biol. 22(5): 377-386 (2015) - 2013
- [j11]Chiao-Feng Lin, Otto Valladares, Daniel M. Childress, Egor Klevak, Evan T. Geller, Yih-Chii Hwang, Ellen A. Tsai, Gerard D. Schellenberg, Li-San Wang:
DRAW+SneakPeek: Analysis workflow and quality metric management for DNA-seq experiments. Bioinform. 29(19): 2498-2500 (2013) - 2012
- [j10]Serita M. Nelesen, Kevin Liu, Li-San Wang, C. Randal Linder, Tandy J. Warnow:
DACTAL: divide-and-conquer trees (almost) without alignments. Bioinform. 28(12): 274-282 (2012) - [j9]Fan Li, Paul Ryvkin, Daniel M. Childress, Otto Valladares, Brian D. Gregory, Li-San Wang:
SAVoR: a server for sequencing annotation and visualization of RNA structures. Nucleic Acids Res. 40(Web-Server-Issue): 59-64 (2012) - 2011
- [j8]Li-San Wang, James H. Leebens-Mack, P. Kerr Wall, Kevin Beckmann, Claude W. dePamphilis, Tandy J. Warnow:
The Impact of Multiple Protein Sequence Alignment on Phylogenetic Estimation. IEEE ACM Trans. Comput. Biol. Bioinform. 8(4): 1108-1119 (2011) - [c17]Paul Ryvkin, Yuk Yee Leung, Li-San Wang, Brian D. Gregory:
Invited: Multiclass RNA function classification using next-generation sequencing. ICCABS 2011: 10 - 2010
- [j7]Mingyao Li, Muredach P. Reilly, Daniel J. Rader, Li-San Wang:
Correcting population stratification in genetic association studies using a phylogenetic approach. Bioinform. 26(6): 798-806 (2010)
2000 – 2009
- 2009
- [j6]Shane T. Jensen, Sameer Soi, Li-San Wang:
A Bayesian approach to efficient differential allocation for resampling-based significance testing. BMC Bioinform. 10 (2009) - 2007
- [p1]Li-San Wang, Tandy J. Warnow:
Distance-based genome rearrangement phylogeny. Mathematics of Evolution and Phylogeny 2007 - 2006
- [j5]Li-San Wang, Tandy J. Warnow:
Reconstructing Chromosomal Evolution. SIAM J. Comput. 36(1): 99-131 (2006) - [c16]Li-San Wang, Doris Wagner, Chang Seob Kwon, Yanhui Su, Junhyong Kim:
Transcriptional Target Prediction Using Qualitative Reasoning. EMBC 2006: 3138-3141 - [c15]Logan Everett, Li-San Wang, Sridhar Hannenhalli:
Dense subgraph computation via stochastic search: application to detect transcriptional modules. ISMB (Supplement of Bioinformatics) 2006: 117-123 - [c14]Stanislav Angelov, Boulos Harb, Sampath Kannan, Li-San Wang:
Weighted isotonic regression under the L1 norm. SODA 2006: 783-791 - 2005
- [j4]Luay Nakhleh, Li-San Wang:
Phylogenetic Networks: Properties and Relationship to Trees and Clusters. Trans. Comp. Sys. Biology 2: 82-99 (2005) - [c13]Jijun Tang, Li-San Wang:
Improving Genome Rearrangement Phylogeny Using Sequence-Style Parsimony. BIBE 2005: 137-144 - [c12]Luay Nakhleh, Derek A. Ruths, Li-San Wang:
RIATA-HGT: A Fast and Accurate Heuristic for Reconstructing Horizontal Gene Transfer. COCOON 2005: 84-93 - [c11]Luay Nakhleh, Li-San Wang:
Phylogenetic Networks, Trees, and Clusters. International Conference on Computational Science (2) 2005: 919-926 - [c10]Sridhar Hannenhalli, Li-San Wang:
Enhanced position weight matrices using mixture models. ISMB (Supplement of Bioinformatics) 2005: 204-212 - [c9]Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli:
An Interaction-Dependent Model for Transcription Factor Binding. Systems Biology and Regulatory Genomics 2005: 225-234 - 2004
- [c8]Stanislav Angelov, Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim, Li-San Wang:
Genome Identification and Classification by Short Oligo Arrays. WABI 2004: 400-411 - 2003
- [j3]Matthew Spencer, Barbara Bordalejo, Li-San Wang, Adrian C. Barbrook, Linne R. Mooney, Peter Robinson, Tandy J. Warnow, Christopher J. Howe:
Analyzing the Order of Items in Manuscripts of The Canterbury Tales. Comput. Humanit. 37(1): 97-109 (2003) - 2002
- [j2]Bernard M. E. Moret, Li-San Wang, Tandy J. Warnow:
Toward New Software for Computational Phylogenetics. Computer 35(7): 55-64 (2002) - [j1]Bernard M. E. Moret, Jijun Tang, Li-San Wang, Tandy J. Warnow:
Steps toward accurate reconstructions of phylogenies from gene-order data. J. Comput. Syst. Sci. 65(3): 508-525 (2002) - [c7]Cara Stockham, Li-San Wang, Tandy J. Warnow:
Statistically based postprocessing of phylogenetic analysis by clustering. ISMB 2002: 285-293 - [c6]Li-San Wang, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Tandy J. Warnow:
Fast Phylogenetic Methods for the Analysis of Genome Rearrangement Data: An Empirical Study. Pacific Symposium on Biocomputing 2002: 524-535 - [c5]Li-San Wang:
Genome Rearrangement Phylogeny Using Weighbor. WABI 2002: 112-125 - 2001
- [c4]Bernard M. E. Moret, Li-San Wang, Tandy J. Warnow, Stacia K. Wyman:
New approaches for reconstructing phylogenies from gene order data. ISMB (Supplement of Bioinformatics) 2001: 165-173 - [c3]Li-San Wang, Tandy J. Warnow:
Estimating true evolutionary distances between genomes. STOC 2001: 637-646 - [c2]Li-San Wang:
Exact-IEBP: A New Technique for Estimating Evolutionary Distances between Whole Genomes. WABI 2001: 175-188 - 2000
- [c1]Mary E. Cosner, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Li-San Wang, Tandy J. Warnow, Stacia K. Wyman:
A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data. ISMB 2000: 104-115
Coauthor Index
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