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2020 – today
- 2024
[c2]Ziting Zhang, Wenxu Wu, Lei Wei, Xiaowo Wang:
Discovering and Overcoming the Bias in Neoantigen Identification by Unified Machine Learning Models. RECOMB 2024: 348-351- [i1]Wenrui Li, Wei Zhang, Qinghao Zhang, Xuegong Zhang, Xiaowo Wang:
Weakly-supervised causal discovery based on fuzzy knowledge and complex data complementarity. CoRR abs/2405.08699 (2024) - 2023
- [j21]Xuegong Zhang, Lei Wei, Rui Jiang, Xiaowo Wang, Jin Gu, Zhen Xie, Hairong Lv:
Building digital life systems for future biology and medicine. Quant. Biol. 11(3): 207-213 (2023) - 2022
- [j20]Wei Zhang
, Hanwen Xu, Rong Qiao, Bixi Zhong, Xianglin Zhang, Jin Gu, Xuegong Zhang, Lei Wei, Xiaowo Wang:
ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data. Briefings Bioinform. 23(1) (2022) - [j19]Xianglin Zhang, Xiaodong Jia, Bixi Zhong, Lei Wei, Jiaqi Li, Wei Zhang, Huan Fang, Yanda Li, Yinying Lu, Xiaowo Wang:
Evaluating methylation of human ribosomal DNA at each CpG site reveals its utility for cancer detection using cell-free DNA. Briefings Bioinform. 23(4) (2022) - [j18]Lekang Yuan, Zhen Xie, Ye Wang, Xiaowo Wang:
DeSP: a systematic DNA storage error simulation pipeline. BMC Bioinform. 23(1): 185 (2022) - [j17]Lekang Yuan, Zhen Xie, Ye Wang, Xiaowo Wang:
Correction to: DeSP: a systematic DNA storage error simulation pipeline. BMC Bioinform. 23(1): 274 (2022) - 2021
- [j16]Jiaqi Li, Lei Wei, Xianglin Zhang, Wei Zhang, Haochen Wang, Bixi Zhong, Zhen Xie, Hairong Lv, Xiaowo Wang:
DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads. Briefings Bioinform. 22(6) (2021) - [j15]Tao Hu, Shixiong Xu, Lei Wei, Xuegong Zhang, Xiaowo Wang:
CellTracker: an automated toolbox for single-cell segmentation and tracking of time-lapse microscopy images. Bioinform. 37(2): 285-287 (2021) - [j14]Wei Zhang, Lei Wei, Jiaqi Huang, Bixi Zhong, Jiaqi Li, Hanwen Xu, Shuying He, Yu Liu, Juhong Liu, Hairong Lv, Xiaowo Wang:
cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data. Bioinform. 37(22): 4251-4252 (2021) - [j13]Tao Hu, Lei Wei, Shuailin Li, Tianrun Cheng, Xuegong Zhang, Xiaowo Wang:
Single-cell Transcriptomes Reveal Characteristics of MicroRNAs in Gene Expression Noise Reduction. Genom. Proteom. Bioinform. 19(3): 394-407 (2021) - [j12]Shengquan Chen, Qiao Liu, Xuejian Cui, Zhan-Ying Feng, Chunquan Li, Xiaowo Wang, Xuegong Zhang, Yong Wang, Rui Jiang:
OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions. Nucleic Acids Res. 49(Webserver-Issue): 483-490 (2021)
2010 – 2019
- 2019
- [j11]Lei Wei, Ye Yuan, Tao Hu, Shuailin Li, Tianrun Cheng, Jinzhi Lei, Zhen Xie, Michael Q. Zhang, Xiaowo Wang:
Regulation by competition: a hidden layer of gene regulatory network. Quant. Biol. 7(2): 110-121 (2019) - 2018
- [j10]Zheng Wei, Wei Zhang, Huan Fang, Yanda Li, Xiaowo Wang:
esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis. Bioinform. 34(15): 2664-2665 (2018) - [j9]Zhun Miao, Ke Deng, Xiaowo Wang, Xuegong Zhang:
DEsingle for detecting three types of differential expression in single-cell RNA-seq data. Bioinform. 34(18): 3223-3224 (2018) - 2017
- [c1]Xiaowo Wang:
Regulation by competing: A hidden layer of gene regulatory networks. CASE 2017: 96 - 2016
- [j8]Ye Yuan, Xinying Ren, Zhen Xie, Xiaowo Wang:
A quantitative understanding of microRNA-mediated competing endogenous RNA regulation. Quant. Biol. 4(1): 47-57 (2016) - [j7]Chao He, Guipeng Li, Mohamed Nadhir Djekidel, Yang Chen, Xiaowo Wang, Michael Q. Zhang:
Advances in computational ChIA-PET data analysis. Quant. Biol. 4(3): 217-225 (2016) - 2015
- [j6]Honglei Liu, Zheng Wei, Antonia Dominguez, Yanda Li, Xiaowo Wang, Lei S. Qi:
CRISPR-ERA: a comprehensive design tool for CRISPR-mediated gene editing, repression and activation. Bioinform. 31(22): 3676-3678 (2015) - [j5]Chao He, Michael Q. Zhang, Xiaowo Wang:
MICC: an R package for identifying chromatin interactions from ChIA-PET data. Bioinform. 31(23): 3832-3834 (2015) - 2014
- [j4]Honglei Liu, Yanda Li, Xiaowo Wang:
OP-Synthetic: identification of optimal genetic manipulations for the overproduction of native and non-native metabolites. Quant. Biol. 2(3): 100-109 (2014) - 2010
- [j3]Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, Xuegong Zhang:
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinform. 26(1): 136-138 (2010)
2000 – 2009
- 2008
- [j2]Xiaowo Wang, Jin Gu, Michael Q. Zhang, Yanda Li:
Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species. Bioinform. 24(2): 165-171 (2008) - 2005
- [j1]Xiaowo Wang, Jing Zhang, Fei Li, Jin Gu, Tao He, Xuegong Zhang, Yanda Li:
MicroRNA identification based on sequence and structure alignment. Bioinform. 21(18): 3610-3614 (2005)
Coauthor Index
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