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ORCID13th ISMB 2005: Detroit, Michigan, USA (Supplement of Bioinformatics)
- Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005. 2005
- H. V. Jagadish, David J. States, Burkhard Rost
:
ISMB 2005. 1-2 - H. V. Jagadish, David J. States, Burkhard Rost:
ISMB 2005 Organization. 3-6 - Alberto Apostolico, Matteo Comin, Laxmi Parida:
Conservative extraction of over-represented extensible motifs. 9-18 - Grégory Batt, Delphine Ropers, Hidde de Jong, Johannes Geiselmann, Radu Mateescu, Michel Page, Dominique Schneider:
Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli. 19-28 - Tim Beißbarth, Jason A. Tye-Din, Gordon K. Smyth, Terence P. Speed, Robert P. Anderson:
A systematic approach for comprehensive T-cell epitope discovery using peptide libraries. 29-37 - Asa Ben-Hur, William Stafford Noble:
Kernel methods for predicting protein-protein interactions. 38-46 - Karsten M. Borgwardt, Cheng Soon Ong, Stefan Schönauer, S. V. N. Vishwanathan, Alexander J. Smola, Hans-Peter Kriegel:
Protein function prediction via graph kernels. 47-56 - Brona Brejová, Daniel G. Brown, Ming Li, Tomás Vinar:
ExonHunter: a comprehensive approach to gene finding. 57-65 - T. J. Brunette, Oliver Brock:
Improving protein structure prediction with model-based search. 66-74 - Jianlin Cheng, Pierre Baldi:
Three-stage prediction of protein ?-sheets by neural networks, alignments and graph algorithms. 75-84 - Kei-Hoi Cheung, Kevin Y. Yip, Andrew K. Smith, Remko de Knikker, Andy Masiar, Mark Gerstein:
YeastHub: a semantic web use case for integrating data in the life sciences domain. 85-96 - Benny Chor, Tamir Tuller:
Maximum likelihood of evolutionary trees: hardness and approximation. 97-106 - Melissa S. Cline, John Blume, Simon Cawley, Tyson Clark, Jing-Shan Hu, Gang Lu, Nathan Salomonis, Hui Wang, Alan Williams:
ANOSVA: a statistical method for detecting splice variation from expression data. 107-115 - Juan Cortés, Thierry Siméon, Vicente Ruiz de Angulo, David Guieysse, Magali Remaud-Siméon, Vinh Tran:
A path planning approach for computing large-amplitude motions of flexible molecules. 116-125 - Matthew W. Dimmic, Melissa J. Hubisz, Carlos D. Bustamante, Rasmus Nielsen:
Detecting coevolving amino acid sites using Bayesian mutational mapping. 126-135 - Mary E. Dolan, Li Ni, Evelyn Camon, Judith A. Blake:
A procedure for assessing GO annotation consistency. 136-143 - Delbert Dueck, Quaid Morris, Brendan J. Frey:
Multi-way clustering of microarray data using probabilistic sparse matrix factorization. 144-151 - Robert C. Edgar, Eugene W. Myers:
PILER: identification and classification of genomic repeats. 152-158 - Jason Ernst, Gerard J. Nau, Ziv Bar-Joseph:
Clustering short time series gene expression data. 159-168 - Humberto Miguel Garay-Malpartida, Jõao Marcelo Occhiucci, Juliano Alves, José Ernersto Belizário:
CaSPredictor: a new computer-based tool for caspase substrate prediction. 169-176 - Peddinti V. Gopalacharyulu, Erno Lindfors, Catherine Bounsaythip, Teemu Kivioja, Laxman Yetukuri, Jaakko Hollmén, Matej Oresic:
Data integration and visualization system for enabling conceptual biology. 177-185 - Yoonsoo Hahn, Byungkook Lee:
Identification of nine human-specific frameshift mutations by comparative analysis of the human and the chimpanzee genome sequences. 186-194 - Eran Halperin, Gad Kimmel, Ron Shamir:
Tag SNP selection in genotype data for maximizing SNP prediction accuracy. 195-203 - Sridhar Hannenhalli, Li-San Wang:
Enhanced position weight matrices using mixture models. 204-212 - Haiyan Hu, Xifeng Yan, Yu Huang, Jiawei Han, Xianghong Jasmine Zhou:
Mining coherent dense subgraphs across massive biological networks for functional discovery. 213-221 - Jim C. Huang, Quaid Morris, Timothy R. Hughes, Brendan J. Frey:
GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data. 222-231 - Henrik Jönsson, Marcus Heisler, G. Venugopala Reddy, Vikas Agrawal, Victoria Gor, Bruce E. Shapiro, Eric Mjolsness, Elliot M. Meyerowitz:
Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem. 232-240 - Raja Jothi, Maricel G. Kann, Teresa M. Przytycka:
Predicting protein-protein interaction by searching evolutionary tree automorphism space. 241-250 - Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer:
An HMM posterior decoder for sequence feature prediction that includes homology information. 251-257 - Jaeju Ko, Leonel F. Murga, Ying Wei, Mary Jo Ondrechen:
Prediction of active sites for protein structures from computed chemical properties. 258-265 - Zhenzhen Kou, William W. Cohen, Robert F. Murphy:
High-recall protein entity recognition using a dictionary. 266-273 - Wei Li, Clifford A. Meyer, Xiaole Shirley Liu:
A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences. 274-282 - Shaun Mahony, Aaron Golden, Terry J. Smith, Panayiotis V. Benos:
Improved detection of DNA motifs using a self-organized clustering of familial binding profiles. 283-291 - Ramgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald:
High-throughput inference of protein-protein interfaces from unassigned NMR data. 292-301 - Elena Nabieva, Kam Jim, Amit Agarwal, Bernard Chazelle, Mona Singh:
Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. 302-310 - Niranjan Nagarajan, Neil Jones, Uri Keich:
Computing the P-value of the information content from an alignment of multiple sequences. 311-318 - Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker:
Beyond the clause: extraction of phosphorylation information from medline abstracts. 319-327 - Guy Nimrod, Fabian Glaser, David Steinberg, Nir Ben-Tal, Tal Pupko:
In silico identification of functional regions in proteins. 328-337 - William Stafford Noble, Scott Kuehn, Robert E. Thurman, Man Yu, John A. Stamatoyannopoulos:
Predicting the in vivo signature of human gene regulatory sequence. 328-343 - Amol Prakash, Martin Tompa:
Statistics of local multiple alignments. 344-350 - Alkes L. Price, Neil Christopher Jones, Pavel A. Pevzner:
De novo identification of repeat families in large genomes. 351-358 - Sanjay Joshua Swamidass, Jonathan H. Chen, Jocelyne Bruand, Peter Phung, Liva Ralaivola, Pierre Baldi:
Kernels for small molecules and the prediction of mutagenicity, toxicity and anti-cancer activity. 359-368 - Gunnar Rätsch, Sören Sonnenburg, Bernhard Schölkopf:
RASE: recognition of alternatively spliced exons in C.elegans. 369-377 - Tali Sadka, Michal Linial:
Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains. 378-386 - Roded Sharan, Eugene W. Myers:
A motif-based framework for recognizing sequence families. 387-393 - Alena Shmygelska:
Search for folding nuclei in native protein structures. 394-402 - Andrew D. Smith, Pavel Sumazin, Debopriya Das, Michael Q. Zhang:
Mining ChIP-chip data for transcription factor and cofactor binding sites. 403-412 - Yun S. Song, Yufeng Wu, Dan Gusfield:
Efficient computation of close lower and upper bounds on the minimum number of recombinations in biological sequence evolution. 413-422 - Mat Soukup, HyungJun Cho, Jae K. Lee:
Robust classification modeling on microarray data using misclassification penalized posterior. 423-430 - Haixu Tang, Yehia Mechref, Milos V. Novotny:
Automated interpretation of MS/MS spectra of oligosaccharides. 431-439 - Kannan Tharakaraman, Leonardo Mariño-Ramírez, Sergey Sheetlin, David Landsman, John L. Spouge:
Alignments anchored on genomic landmarks can aid in the identification of regulatory elements. 440-448 - Henry F. Winstanley, Sanne Abeln, Charlotte M. Deane:
How old is your fold? 449-458 - Yong Woo, Winfried Krueger, Anupinder Kaur, Gary A. Churchill:
Experimental design for three-color and four-color gene expression microarrays. 459-467 - Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa:
Supervised enzyme network inference from the integration of genomic data and chemical information. 468-477 - Yuzhen Ye, Andrei Osterman, Ross A. Overbeek, Adam Godzik:
Automatic detection of subsystem/pathway variants in genome analysis. 478-486 - Jiangsheng Yu, Xue-wen Chen:
Bayesian neural network approaches to ovarian cancer identification from high-resolution mass spectrometry data. 487-494 - Chenggang Yu, Nela Zavaljevski, Fred J. Stevens, Kelly Yackovich, Jaques Reifman:
Classifying noisy protein sequence data: a case study of immunoglobulin light chains. 495-501 - Chunfang Zheng, Aleksander Lenert, David Sankoff:
Reversal distance for partially ordered genomes. 502-508
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