SUPERFAMILY 1.75 HMM library and genome assignments server

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Result 1 of 1 for 1a8y.

  1.  
    2. SCOP classification
    Class :   Alpha and beta proteins (a/b)
    Fold :   Thioredoxin fold
    Superfamily :   Thioredoxin-like
    Family :   Calsequestrin
    Protein :   Calsequestrin
    PDB Entry Domain :   1a8y A:3-126
    PDB Entry Domain :   1a8y A:127-228
    PDB Entry Domain :   1a8y A:229-347
       
       

    Superfamily Family
    Alignments Alignments
    Genome assignments Genome assignments
    Taxonomic distribution Taxonomic distribution
    Domain combinations
    Models


Result 1 of 1 for 1a8y.

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You may search for a superfamily, a sequence or a genome with any of the following:

  • Superfamily name or part thereof, e.g. globin

  • SCOP classification of a superfamily, e.g. a.1.1

  • SCOP unique identifier (sunid) of a superfamily, e.g. 46458

  • InterPro superfamily accession number, e.g. SSF46458

  • PDB identifier of a member of the superfamily, e.g. 1abr

  • Hidden Markov model number, e.g. 0046853

  • Sequence identifier or accession number of a genomic sequence, e.g.:

    • gi|16131178|ref|NP_417758.1| for NCBI bacterial genomes

    • ENSP00000261267 for eukaryotic genomes from Ensembl

    • P24091 for Swiss-Prot/TrEMBL entries

  • A genome name or part thereof, e.g. arabidopsis

  • A common organism name, e.g. horse


Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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