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16 pages, 2545 KiB  
Article
Barefoot Walking (Earthing) Craze and Policy Support Among Community-Dwelling Older Adults in South Korea: A Grounded Theory Analysis
by So-Yoon Lee and Won-Chul Bing
Sustainability 2024, 16(22), 9637; https://doi.org/10.3390/su16229637 - 5 Nov 2024
Viewed by 424
Abstract
Barefoot walking is currently a craze in South Korean communities. In particular, the elderly are participating in barefoot walking (earthing) to improve their physical and mental health due to their increasing desire for a healthy life. The purpose of this study was to [...] Read more.
Barefoot walking is currently a craze in South Korean communities. In particular, the elderly are participating in barefoot walking (earthing) to improve their physical and mental health due to their increasing desire for a healthy life. The purpose of this study was to analyze causes, processes, and consequences of the barefoot walking craze among the elderly in Korean society. The research method used was the grounded theory method. Thirty-five elderly people participating in barefoot walking were selected as participants. Data were analyzed according to open coding, axial coding, and selective coding proposed by Strauss and Corbin. First, an open coding phase yielded 61 concepts, 18 subcategories, and 7 categories through continuous questioning and comparative analysis. Second, in the axial coding stage, causal, contextual, and mediating conditions, action/interaction strategies, and consequences were presented, centering on the phenomenon. Causal conditions and contextual conditions contributing to the phenomenon of barefoot walking were identified as “motivation to participate” and “barefoot walking environment”, respectively. “Participating in barefoot walking” was identified as a phenomenon in the axial coding paradigm. The intervening condition was analyzed as “information about barefoot walking”. The action/interaction strategy was analyzed as “spreading the value of barefoot walking”. In the axial coding paradigm, consequences that emerged through the action/interaction strategy were “restoring physical and mental health” and “community spread and nuisance”. Third, in the selective coding stage, “barefoot walking as a daily routine” was derived as the core category, and the narrative outline was presented. To create a sustainable barefoot walking environment in Korea, it is necessary to have a healthy civic consciousness that coexists and harmonizes with nature. Full article
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10 pages, 3420 KiB  
Article
Application of a Multi-Spectral UAV Imagery in Germplasm Characterization: Prediction of Forage Biomass and Growth Patterns of Cicer Milkvetch (Astragalus cicer L.) Populations
by David MacTaggart, Steve Shirtliffe, Aaron Beattie, Herbert A. Lardner and Bill Biligetu
Agriculture 2024, 14(11), 1969; https://doi.org/10.3390/agriculture14111969 - 2 Nov 2024
Viewed by 442
Abstract
Unmanned aerial vehicles (UAV)-based multi-spectral imaging could reduce the intensive labour required in phenotyping germplasm in crop breeding. The objectives of this study were to examine if UAV-based imaging could differentiate cicer milkvetch (Astragalus cicer L.) germplasm and identify UAV-based vegetation indices [...] Read more.
Unmanned aerial vehicles (UAV)-based multi-spectral imaging could reduce the intensive labour required in phenotyping germplasm in crop breeding. The objectives of this study were to examine if UAV-based imaging could differentiate cicer milkvetch (Astragalus cicer L.) germplasm and identify UAV-based vegetation indices with correlations to its dry matter yield (DMY). A spaced nursery from 27 cicer milkvetch populations was established near Saskatoon, SK, Canada, in 2019. From 1 June to 15 October in 2020 and 2021, phenotypic traits including maximum stem length, leaf number per stem, rhizome spread rate, and stem density, along with two UAV-measured traits, green area and canopy volume, were measured bi-weekly. Forage DMY was determined in late June and mid-October of each year. In this study, normalized difference vegetation index (NDVI) green area and NDVI canopy volume data differentiated the three selected populations. NDVI green area had the highest correlation with forage DMY among the traits (June harvest: r = 0.91, October harvest: r = 0.77). Among measured phenotypic traits, maximum stem length had the highest correlation with forage DMY (June harvest: r = 0.74, October harvest: r = 0.83), which was significantly correlated to NDVI green area. The results indicated potential use of UAV-phenotyping in single plant evaluation in plant breeding. Full article
(This article belongs to the Section Digital Agriculture)
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18 pages, 35290 KiB  
Article
Quantitative Characterization of Surfactant Displacement Efficiency by NMR—Take the Tight Oil of Chang 8 Member of Yanchang Formation in Fuxian Area, Ordos Basin, as an Example
by Hu Yin, Gaorun Zhong, Jiangbin Liu and Yanjun Wu
Energies 2024, 17(21), 5450; https://doi.org/10.3390/en17215450 - 31 Oct 2024
Viewed by 295
Abstract
Surfactant flooding is a pivotal technique for enhancing oil recovery efficiency. The Chang 8 member of the Yanchang Formation in the Ordos Basin exemplifies a quintessential tight oil reservoir. Specifically, 47.9% of wells yield less than 0.1 t/d, 27.0% produce between 0.1 and [...] Read more.
Surfactant flooding is a pivotal technique for enhancing oil recovery efficiency. The Chang 8 member of the Yanchang Formation in the Ordos Basin exemplifies a quintessential tight oil reservoir. Specifically, 47.9% of wells yield less than 0.1 t/d, 27.0% produce between 0.1 and 0.2 t/d, and 18.8% generate outputs ranging from 0.2 to 0.3 t/d, while only a mere 6.3% exceed production rates of over 0.3 t/d, indicating minimal efficacy of water flooding development in this context. In this study, we conducted an extensive investigation into the geological characteristics of the Yanchang 8 reservoir within the Ordos Basin, leading to the identification and evaluation of three surfactants based on their interfacial tension properties. The optimal injection concentration was determined through on-line displacement nuclear magnetic resonance imaging analysis that refined surface activity conducive to developing the Chang 8 member, ultimately resulting in increased spread volume and enhanced crude oil production from individual wells. The results indicate the following: (1) The interfacial tension of NP-10, FSD-952, and GPHQ-1 at concentrations of 0.05%, 0.1%, 0.2%, 0.3%, 0.4%, and 0.5% exhibited a pattern of initial decrease followed by an increase. The mass concentration corresponding to the minimum interfacial tension for NP-10 is identified as 0.1%, which is also the case for GPHQ-1; however, for FSD-952, this occurs at a concentration of 0.4%. Among the surface-active agents NP-10, GPHQ-1, and FSD-952, GPHQ-1 demonstrated the lowest interfacial tension value at an impressive measurement of 0.0762 mN/m. (2) When the displacement of the 0.1% GPHQ-1 surfactant reaches 10 PV, the displacement efficiency improves from 69.69% to 76.36%, representing an increase of 6.67%. The minimum pore size observed during GPHQ-1 surfactant displacement is 0.01 μm. In contrast, when the displacement of the NP-10 surfactant at a concentration of 0.1% reaches 10 PV, the efficiency rises from 68.32% to 72.02%, indicating an enhancement of 3.7%. The corresponding minimum pore size for NP-10 surfactant displacement is recorded at 0.02 μm. Furthermore, when the displacement of the FSD-952 surfactant at a concentration of 0.4% achieves 10 PV, its efficiency increases from 69.93% to 74.77%, reflecting an improvement of 4.81%. The minimum pore size associated with the activated portion of FSD-952 is noted as being approximately 0.03 μm. Full article
(This article belongs to the Section H: Geo-Energy)
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14 pages, 644 KiB  
Article
Spread Option Pricing Under Finite Liquidity Framework
by Traian A. Pirvu and Shuming Zhang
Viewed by 367
Abstract
This work explores a finite liquidity model to price spread options and assess the liquidity impact. We employ Kirk approximation for computing the spread option price and its delta. The latter is needed since the liquidity impact is caused by the delta hedging [...] Read more.
This work explores a finite liquidity model to price spread options and assess the liquidity impact. We employ Kirk approximation for computing the spread option price and its delta. The latter is needed since the liquidity impact is caused by the delta hedging of a large investor. Our main contribution is a novel methodology to price spread options in this paradigm. Kirk approximation in conjunction with Monte Carlo simulations yields the spread option prices. Moreover, the antithetic and control variates variance reduction techniques improve the performance of our method. Numerical experiments reveal that the finite liquidity causes a liquidity value adjustment in option prices ranging from 0.53% to 2.81%. The effect of correlation on prices is also explored, and as expected the option price increases due to the diversification effect, but the liquidity impact decreases slightly. Full article
(This article belongs to the Special Issue Mathematical Methods Applied in Pricing and Investment Problems)
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23 pages, 4147 KiB  
Article
Modeling Population Mobility Flows: A Hybrid Approach Integrating a Gravity Model and Machine Learning
by Jingjing Liu, Lei Xu, Le Ma and Nengcheng Chen
ISPRS Int. J. Geo-Inf. 2024, 13(11), 379; https://doi.org/10.3390/ijgi13110379 - 30 Oct 2024
Viewed by 491
Abstract
Population mobility between cities significantly affects traffic congestion, disease spread, and societal well-being. As globalization and urbanization accelerate, understanding the dynamics of population mobility becomes increasingly important. Traditional population migration models reveal the factors influencing migration, while machine learning methods provide effective tools [...] Read more.
Population mobility between cities significantly affects traffic congestion, disease spread, and societal well-being. As globalization and urbanization accelerate, understanding the dynamics of population mobility becomes increasingly important. Traditional population migration models reveal the factors influencing migration, while machine learning methods provide effective tools for creating data-driven models to handle the nonlinear relationships between origin and destination characteristics and migration. To deepen the understanding of population mobility issues, this study presents GraviGBM, an expandable population mobility simulation model that combines the gravity model with machine learning, significantly enhancing simulation accuracy. By employing SHAPs (SHapley Additive exPlanations), we interpret the modeling results and explore the relationship between urban characteristics and population migration. Additionally, this study includes a case analysis of COVID-19, extending the model’s application during public health emergencies and evaluating the contribution of model variables in this context. The results show that GraviGBM performs exceptionally well in simulating inter-city population migration, with an RMSE of 4.28, far lower than the RMSE of the gravity model (45.32). This research indicates that distance emerged as the primary factor affecting mobility before the pandemic, with economic factors and population also playing significant roles. During the pandemic, distance remained dominant, but the significance of short distances gained importance. Pandemic-related indicators became prominent, while economics, population density, and transportation substantially lost their influence. A city-to-city flow analysis shows that when population sizes are comparable, economic factors prevail, but when economic profiles match, living conditions dictate migration. During the pandemic, residents from hard-hit areas moved to more distant cities, seeking normalcy. This research offers a comprehensive perspective on population mobility, yielding valuable insights for future urban planning, pandemic response, and decision-making processes. Full article
(This article belongs to the Special Issue Advances in AI-Driven Geospatial Analysis and Data Generation)
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14 pages, 6204 KiB  
Article
Antifungal Activity of Rhizosphere Bacillus Isolated from Ziziphus jujuba Against Alternaria alternata
by Qiang Zou, Yumeng Zhang, Xinxiang Niu, Hongmei Yang, Min Chu, Ning Wang, Huifang Bao, Faqiang Zhan, Rong Yang, Kai Lou and Yingwu Shi
Microorganisms 2024, 12(11), 2189; https://doi.org/10.3390/microorganisms12112189 - 30 Oct 2024
Viewed by 396
Abstract
The serious impact of Alternaria alternata on jujube black spot disease has seriously affected the quality and yield of jujube, constraining the sustainable development of the jujube industry. The purpose of this study was to isolate and screen highly effective biocontrol strains of [...] Read more.
The serious impact of Alternaria alternata on jujube black spot disease has seriously affected the quality and yield of jujube, constraining the sustainable development of the jujube industry. The purpose of this study was to isolate and screen highly effective biocontrol strains of jujube black spot disease from jujube rhizosphere soil. Thirty-three soil samples were collected from four regions in southern Xinjiang. The strains with antagonistic effects were isolated and screened by the dilution spread method and plate confrontation method and identified by morphological, physiological, and biochemical characteristics, as well as 16S rDNA, gyrB, and rpoB gene sequences. Indoor and field efficacy experiments were conducted to determine their biocontrol effect. A total of 110 strains with antibacterial activity were selected, and one strain, Bacillus velezensis 26-8, with a stable antagonistic effect was further tested. Biological characteristic experiments showed that strain 26-8 could grow at NaCl concentrations of 0.5–10% and pH 4.0–9.0. The biocontrol experiment results showed that Bacillus velezensis 26-8 could achieve an 89.83% control effect against black spot disease. In conclusion, strain 26-8 has good salt and alkali tolerance, exerts a good control effect on jujube black spot disease, and is worthy of further study. Full article
(This article belongs to the Section Antimicrobial Agents and Resistance)
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21 pages, 3169 KiB  
Article
Using Legume-Enriched Cover Crops to Improve Grape Yield and Quality in Hillside Vineyards
by Oriana Silvestroni, Edoardo Dottori, Luca Pallotti, Tania Lattanzi, Rodolfo Santilocchi and Vania Lanari
Agronomy 2024, 14(11), 2528; https://doi.org/10.3390/agronomy14112528 - 28 Oct 2024
Viewed by 792
Abstract
Natural covering (NATC) has spread on hillside vineyards of central Italy as a replacement for tillage to reduce soil erosion, although it increased nitrogen and water needs. Therefore, in the current context of global warming, using cover crops (CCs) that require less water [...] Read more.
Natural covering (NATC) has spread on hillside vineyards of central Italy as a replacement for tillage to reduce soil erosion, although it increased nitrogen and water needs. Therefore, in the current context of global warming, using cover crops (CCs) that require less water and provide nitrogen becomes crucial. The effects of two low-competition legume-enriched CCs in a rainfed hillside vineyard—a perennial legume–grass mixture (PLGM) and an annual legume cover crop of Trifolium alexandrinum (ALTA)—were compared with NATC over three years. PLGM and ALTA provided good levels of soil coverage, slightly lower than NATC, which had a negligible presence of legumes. PLGM and ALTA, due to low competition, enhanced vine vigor, resulting in thicker and wider canopies (as indicated by total leaf area and leaf layer number), higher pruning weight, and increased yield. PLGM and ALTA led to good qualitative levels, with higher grapes acidities, lower pH and total soluble solids content and, additionally, significantly higher yeast assimilable nitrogen content. In conclusion, implementing low-competition legume species in CCs is an effective tool to avoid soil erosion in a climate change scenario, leading to increased productivity, higher acidity, and improved nitrogen content in the grapes. Full article
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23 pages, 5229 KiB  
Article
Immunoreactivity Analysis of MHC-I Epitopes Derived from the Nucleocapsid Protein of SARS-CoV-2 via Computation and Vaccination
by Dongbo Jiang, Zilu Ma, Junqi Zhang, Yubo Sun, Tianyuan Bai, Ruibo Liu, Yongkai Wang, Liang Guan, Shuaishuai Fu, Yuanjie Sun, Yuanzhe Li, Bingquan Zhou, Yulin Yang, Shuya Yang, Yuanhang Chang, Baozeng Sun and Kun Yang
Vaccines 2024, 12(11), 1214; https://doi.org/10.3390/vaccines12111214 - 25 Oct 2024
Viewed by 371
Abstract
Background: Since 2019, the SARS-CoV-2 virus has been responsible for the global spread of respiratory illness. As of 1 September 2024, the cumulative number of infections worldwide exceeded 776 million. There are many structural proteins of the virus, among which the SARS-CoV-2 [...] Read more.
Background: Since 2019, the SARS-CoV-2 virus has been responsible for the global spread of respiratory illness. As of 1 September 2024, the cumulative number of infections worldwide exceeded 776 million. There are many structural proteins of the virus, among which the SARS-CoV-2 nucleocapsid (N) protein plays a pivotal role in the viral life cycle, participating in a multitude of essential activities following viral invasion. An important antiviral immune response is the major histocompatibility complex (MHC)-restricted differentiation cluster 8 (CD8+) T cell cytotoxicity. Therefore, understanding the immunogenicity of SARS-CoV-2 NP-specific MHC-I-restricted epitopes is highly important. Methods: MHC-I molecules from 11 human leukocyte antigen I (HLA-I) superfamilies with 98% population coverage and 6 mouse H2 alleles were selected. The affinity were screened by IEDB, NetMHCpan, SYFPEITHI, SMMPMBEC and Rankpep. Further immunogenicity and conservative analyses were performed using VaxiJen and BLASTp, respectively. EpiDock was used to simulate molecular docking. Cluster analysis was performed. Selective epitopes were validated by enzyme-linked immunospot (ELISpot) assay and flow cytometry in the mice with pVAX-NPSARS-CoV-2 immunization. Enzyme-Linked Immunosorbent Assay (ELISA) was used to detect whether the preferred epitope induced humoral immunity. Results: There were 64 dominant epitopes for the H-2 haplotype and 238 dominant epitopes for the HLA-I haplotype. Further analysis of immunogenicity and conservation yielded 8 preferred epitopes, and docking simulations were conducted with corresponding MHC-I alleles. The relationships between the NP peptides and MHC-I haplotypes were then determined via two-way hierarchical clustering. ELISA, ELISpot assay, and flow cytometry revealed that the preferred epitope stimulated both humoral and cellular immunity and enhanced cytokine secretion in mice. Conclusions: our study revealed the general patterns among multiple haplotypes within the humans and mice superfamily, providing a comprehensive assessment of the pan-MHC-I immunoreactivity of SARS-CoV-2 NP. Our findings would render prospects for the development and application of epitope-based immunotherapy in lasting viral epidemics. Full article
(This article belongs to the Special Issue Advances in Vaccines against Infectious Diseases)
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20 pages, 4450 KiB  
Article
Comprehensive Analysis of Phenotypic Traits in Chinese Cabbage Using 3D Point Cloud Technology
by Chongchong Yang, Lei Sun, Jun Zhang, Xiaofei Fan, Dongfang Zhang, Tianyi Ren, Minggeng Liu, Zhiming Zhang and Wei Ma
Agronomy 2024, 14(11), 2506; https://doi.org/10.3390/agronomy14112506 - 25 Oct 2024
Viewed by 467
Abstract
Studies on the phenotypic traits and their associations in Chinese cabbage lack precise and objective digital evaluation metrics. Traditional assessment methods often rely on subjective evaluations and experience, compromising accuracy and reliability. This study develops an innovative, comprehensive trait evaluation method based on [...] Read more.
Studies on the phenotypic traits and their associations in Chinese cabbage lack precise and objective digital evaluation metrics. Traditional assessment methods often rely on subjective evaluations and experience, compromising accuracy and reliability. This study develops an innovative, comprehensive trait evaluation method based on 3D point cloud technology, with the aim of enhancing the precision, reliability, and standardization of the comprehensive phenotypic traits of Chinese cabbage. By using multi-view image sequences and structure-from-motion algorithms, 3D point clouds of 50 plants from each of the 17 Chinese cabbage varieties were reconstructed. Color-based region growing and 3D convex hull techniques were employed to measure 30 agronomic traits. Comparisons between 3D point cloud-based measurements of the plant spread, plant height, leaf area, and leaf ball volume and traditional methods yielded R2 values greater than 0.97, with root mean square errors of 1.27 cm, 1.16 cm, 839.77 cm3, and 59.15 cm2, respectively. Based on the plant spread and plant height, a linear regression prediction of Chinese cabbage weights was conducted, yielding an R2 value of 0.76. Integrated optimization algorithms were used to test the parameters, reducing the measurement time from 55 min when using traditional methods to 3.2 min. Furthermore, in-depth analyses including variation, correlation, principal component analysis, and clustering analyses were conducted. Variation analysis revealed significant trait variability, with correlation analysis indicating 21 pairs of traits with highly significant positive correlations and 2 pairs with highly significant negative correlations. The top six principal components accounted for 90% of the total variance. Using the elbow method, k-means clustering determined that the optimal number of clusters was four, thus classifying the 17 cabbage varieties into four distinct groups. This study provides new theoretical and methodological insights for exploring phenotypic trait associations in Chinese cabbage and facilitates the breeding and identification of high-quality varieties. Compared with traditional methods, this system provides significant advantages in terms of accuracy, speed, and comprehensiveness, with its low cost and ease of use making it an ideal replacement for manual methods, being particularly suited for large-scale monitoring and high-throughput phenotyping. Full article
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10 pages, 2238 KiB  
Article
Efficacy of Commercial Disinfectants Against Black Root Rot (Berkeleyomyces rouxiae) and Verticillium Wilt (Verticillium dahliae) Pathogens of Cotton
by Chi P. T. Nguyen, Brenda Vo and Duy P. Le
Agronomy 2024, 14(11), 2502; https://doi.org/10.3390/agronomy14112502 - 25 Oct 2024
Viewed by 400
Abstract
Black root rot (BRR) and Verticillium wilt of cotton are caused by soilborne Berkeleyomyces rouxiae and Verticillium dahliae, respectively, and can individually cause yield loss of a 10–50% in New South Wales (NSW). Both diseases were first detected in a northern valley [...] Read more.
Black root rot (BRR) and Verticillium wilt of cotton are caused by soilborne Berkeleyomyces rouxiae and Verticillium dahliae, respectively, and can individually cause yield loss of a 10–50% in New South Wales (NSW). Both diseases were first detected in a northern valley of NSW but are now present across the state. ‘Come Clean Go Clean’ is a widely practiced biosecurity measure used to minimize the risk of further introducing the pathogens from one field to another by restricting the movement of soil-contaminated farm equipment and machinery. We rely on cleaning agents to effectively wash down and decontaminate the equipment and machinery. In this study, we examined 12 locally available, commercial disinfectants for their efficacy against B. rouxiae and V. dahliae reproductive structures with and without soil contamination of 10% (w/v). We found a significant interaction between pathogens, disinfectants, and soil amendment (p < 0.01). The germination of B. rouxiae chlamydospores and endoconidia in both the presence and absence of soil contamination was completely suppressed even after a short 10 sec exposure to 70% ethanol and 25% bleach. Both 70% ethanol and bleach were highly lethal at 10 sec exposures in similar assays against V. dahliae microsclerotia and conidia. Some other commercial products were able to reduce the germination rate significantly but did not completely kill microsclerotia and conidia even after 30 min of exposure. The lethal effect against B. rouxiae and V. dahliae warrants further exploration of both 70% ethanol and bleach to improve their field applications. Additionally, the efficacy of most tested commercial disinfectants was time-dependent; however, this is not recommended on the labels for their effectiveness. This study provides an additional integrated disease management option aiming to limit the spread of the pathogens. Full article
(This article belongs to the Section Pest and Disease Management)
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12 pages, 4218 KiB  
Article
Single-Cell Virology: On-Chip, Quantitative Characterization of the Dynamics of Virus Spread from One Single Cell to Another
by Wu Liu, Claus O. Wilke, Jamie J. Arnold, Mohamad S. Sotoudegan and Craig E. Cameron
Viruses 2024, 16(11), 1659; https://doi.org/10.3390/v16111659 - 24 Oct 2024
Viewed by 467
Abstract
Virus spread at the single-cell level is largely uncharacterized. We have designed and constructed a microfluidic device in which each nanowell contains a single, infected cell (donor) and a single, uninfected cell (recipient). Using a GFP-expressing poliovirus as our model, we observed both [...] Read more.
Virus spread at the single-cell level is largely uncharacterized. We have designed and constructed a microfluidic device in which each nanowell contains a single, infected cell (donor) and a single, uninfected cell (recipient). Using a GFP-expressing poliovirus as our model, we observed both lytic and non-lytic spread. Donor cells supporting lytic spread established infection earlier than those supporting non-lytic spread. However, non-lytic spread established infections in recipient cells substantially faster than lytic spread and yielded higher rates of genome replication. While lytic spread was sensitive to the presence of capsid entry/uncoating inhibitors, non-lytic spread was not. Consistent with emerging models for non-lytic spread of enteroviruses using autophagy, reduction in LC3 levels in cells impaired non-lytic spread and elevated the fraction of virus in donor cells spreading lytically. The ability to distinguish lytic and non-lytic spread unambiguously will enable discovery of viral and host factors and host pathways used for non-lytic spread of enteroviruses and other viruses as well. Full article
(This article belongs to the Section General Virology)
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15 pages, 3155 KiB  
Article
Transcriptome Analysis Deciphers the Underlying Molecular Mechanism of Peanut Lateral Branch Angle Formation Using Erect Branching Mutant
by Liangqiong He, Conghui Yu, Guanghao Wang, Lei Su, Xin Xing, Tiantian Liu, Zhipeng Huang, Han Xia, Shuzhen Zhao, Zhongkui Gao, Xingjun Wang, Chuanzhi Zhao, Zhuqiang Han and Jiaowen Pan
Genes 2024, 15(10), 1348; https://doi.org/10.3390/genes15101348 - 21 Oct 2024
Viewed by 585
Abstract
Background The growth habit (GH), also named the branching habit, is an important agronomic trait of peanut and mainly determined by the lateral branch angle (LBA). The branching habit is closely related to peanut mechanized farming, pegging, yield, and disease management. Objectives However, [...] Read more.
Background The growth habit (GH), also named the branching habit, is an important agronomic trait of peanut and mainly determined by the lateral branch angle (LBA). The branching habit is closely related to peanut mechanized farming, pegging, yield, and disease management. Objectives However, the molecular basis underlying peanut LBA needs to be uncovered. Methods In the present study, an erect branching peanut mutant, eg06g, was obtained via 60Co γ-ray-radiating mutagenesis of a spreading-type peanut cultivar, Georgia-06G (G06G). RNA-seq was performed to compare the transcriptome variation of the upper sides and lower sides of the lateral branch of eg06g and G06G. Results In total, 4908 differentially expressed genes (DEGs) and 5833 DEGs were identified between eg06g and G06G from the lower sides and upper sides of the lateral branch, respectively. GO, KEGG, and clustering enrichment analysis indicated that the carbohydrate metabolic process, cell wall organization or biogenesis, and plant hormone signal transduction were mainly enriched in eg06g. Conclusions Further analysis showed that the genes involved in starch biosynthesis were upregulated in eg06g, which contributed to amyloplast sedimentation and gravity perception. Auxin homeostasis and transport-related genes were found to be upregulated in eg06g, which altered the redistribution of auxin in eg06g and in turn triggered apoplastic acidification and activated cell wall modification-related enzymes, leading to tiller angle establishment through the promotion of cell elongation at the lower side of the lateral branch. In addition, cytokinin and GA also demonstrated synergistic action to finely regulate the formation of peanut lateral branch angles. Collectively, our findings provide new insights into the molecular regulation of peanut LBA and present genetic materials for breeding peanut cultivars with ideotypes. Full article
(This article belongs to the Special Issue Genetic Breeding and Improvement of Peanut)
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24 pages, 3842 KiB  
Review
Unravelling the Current Status of Rice Stripe Mosaic Virus: Its Geographical Spread, Biology, Epidemiology, and Management
by Md. Atik Mas-ud, Md. Rayhan Chowdhury, Sadiya Arefin Juthee, Muhammad Fazle Rabbee, Mohammad Nurul Matin and Sang Gu Kang
Agronomy 2024, 14(10), 2442; https://doi.org/10.3390/agronomy14102442 - 21 Oct 2024
Viewed by 891
Abstract
Rice stripe mosaic virus (RSMV) belongs to the Cytorhabdovirus species in the Rhabdoviridae family. Recently, RSMV was widely spread in East Asia and caused severe yield losses. RSMV is transmitted by the planthopper vectors, Recilia dorsalis, Nephotettix virescens, and Nilaparvata lugens [...] Read more.
Rice stripe mosaic virus (RSMV) belongs to the Cytorhabdovirus species in the Rhabdoviridae family. Recently, RSMV was widely spread in East Asia and caused severe yield losses. RSMV is transmitted by the planthopper vectors, Recilia dorsalis, Nephotettix virescens, and Nilaparvata lugens, that mostly affect rice. The adult vectors can hibernate, transmit the virus, lay eggs on rice plants, and, finally, multiply in subsequent generations, resulting in new infection outbreaks. RSMV-infected rice varieties display striped mosaicism, mild dwarfism, stiff and twisted leaves, delayed heading, short panicles with large unfilled grains, and yield reduction. In nature, the infection of multiple pathogens in the same host is widespread, which is defined as co-infection. It can be antagonistic or synergistic. Pathological synergistic effects between RSMV and other viruses can generate strains with new genetic characteristics, leading to unpredictable epidemiological consequences. After the first identification of RSMV in 2015, significant advancements in understanding the disease’s characteristics, symptoms, cycles, geographic distribution, potential vectors, and synergistic interaction, as well as its management strategies, were developed. To reduce the damage due to RSMV infection, many scientists have recommended pest control techniques to target adult vectors. It is also essential to confirm the actual time of monitoring, development of resistant varieties, and changes in cultivation systems. Due to the limitations of the conventional plant disease control technologies, improvements in efficiency and safety are in high demand. Therefore, to find efficient and environmentally safe controls to mitigate these challenges, reviews of research are the foremost step. In this review, we summarize the basic epidemiological information about the origin of RSMV and its infection symptoms in the field, synergistic interaction with viruses during co-transmission, yield losses, formulation of the disease cycle, and control strategies from several case studies. Finally, we recommend the formulation of the disease cycle and management strategies of RSMV infection. Full article
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16 pages, 3156 KiB  
Article
Modified Surface Drip Irrigation and Hydraulic Barrier Impacts on Soil Moisture and Water Productivity for Tomatoes in a Greenhouse
by Faisal Ibrahim Zeineldin, Khalid G. Biro Turk and Nagat Ahmed Elmulthum
Water 2024, 16(20), 2926; https://doi.org/10.3390/w16202926 - 15 Oct 2024
Viewed by 520
Abstract
Considerable amounts of irrigation water of vegetable crops grown in homogenous sandy soil profiles could be subjected to deep percolation water losses due to inappropriately designed surface or subsurface drip irrigation methods. This study aimed to investigate the combined influence of implementing clay [...] Read more.
Considerable amounts of irrigation water of vegetable crops grown in homogenous sandy soil profiles could be subjected to deep percolation water losses due to inappropriately designed surface or subsurface drip irrigation methods. This study aimed to investigate the combined influence of implementing clay soil layer in homogenous sandy soil profile of low-tech greenhouse ridges and using modified surface drip irrigation (M-DI) on soil moisture distribution and water productivity of tomatoes. In the greenhouse, a 7.5 cm thick clay soil layer was implemented 15 cm from the soil surface of each ridge as a hydraulic barrier. Three irrigation regimes (100%, 70% and 50% of ETo) were imposed with the M-DI on tomato plants and 100%ETo with surface drip irrigation (DI) as control. Regarding economic valuation, viability was preserved for the M-DI and DI methods. The outcome indicated that soil moisture spreads more horizontally than vertically on the sandy soil above the clay soil layer. The combined effect of the homogenous sandy soil profile amendment and full irrigation (100%ETo) with the M-DI irrigation method increased the tomato fruit yield by 64.5%. Furthermore, the combined influence enhanced water productivity by the M-DI to 54.7 kg/m3 compared to 32 kg/m3 by the DI. However, M-DI demonstrated dominance over DI regarding returns, yield, and profit. Economic-wise, the M-DI requires 50% less of the lateral pipelines needed by the DI in low-tech greenhouses. Adopting the M-DI with a hydraulic barrier can improve soil moisture, water productivity, yield, and returns for tomato crops in low-tech greenhouses under sandy soil conditions. Also, the M-DI with the hydraulic clay barriers was an economically viable investment compared to the DI without clay barriers for growing tomatoes in low-tech greenhouses. Full article
(This article belongs to the Special Issue Improved Irrigation Management Practices in Crop Production)
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19 pages, 714 KiB  
Article
Enhanced COVID-19 Detection from X-ray Images with Convolutional Neural Network and Transfer Learning
by Qanita Bani Baker, Mahmoud Hammad, Mohammed Al-Smadi, Heba Al-Jarrah, Rahaf Al-Hamouri and Sa’ad A. Al-Zboon
J. Imaging 2024, 10(10), 250; https://doi.org/10.3390/jimaging10100250 - 13 Oct 2024
Viewed by 1043
Abstract
The global spread of Coronavirus (COVID-19) has prompted imperative research into scalable and effective detection methods to curb its outbreak. The early diagnosis of COVID-19 patients has emerged as a pivotal strategy in mitigating the spread of the disease. Automated COVID-19 detection using [...] Read more.
The global spread of Coronavirus (COVID-19) has prompted imperative research into scalable and effective detection methods to curb its outbreak. The early diagnosis of COVID-19 patients has emerged as a pivotal strategy in mitigating the spread of the disease. Automated COVID-19 detection using Chest X-ray (CXR) imaging has significant potential for facilitating large-scale screening and epidemic control efforts. This paper introduces a novel approach that employs state-of-the-art Convolutional Neural Network models (CNNs) for accurate COVID-19 detection. The employed datasets each comprised 15,000 X-ray images. We addressed both binary (Normal vs. Abnormal) and multi-class (Normal, COVID-19, Pneumonia) classification tasks. Comprehensive evaluations were performed by utilizing six distinct CNN-based models (Xception, Inception-V3, ResNet50, VGG19, DenseNet201, and InceptionResNet-V2) for both tasks. As a result, the Xception model demonstrated exceptional performance, achieving 98.13% accuracy, 98.14% precision, 97.65% recall, and a 97.89% F1-score in binary classification, while in multi-classification it yielded 87.73% accuracy, 90.20% precision, 87.73% recall, and an 87.49% F1-score. Moreover, the other utilized models, such as ResNet50, demonstrated competitive performance compared with many recent works. Full article
(This article belongs to the Section Medical Imaging)
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