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Search Results (2,666)

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Keywords = K-means clustering

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20 pages, 7057 KiB  
Article
Weather Condition Clustering for Improvement of Photovoltaic Power Plant Generation Forecasting Accuracy
by Kristina I. Haljasmaa, Andrey M. Bramm, Pavel V. Matrenin and Stanislav A. Eroshenko
Algorithms 2024, 17(9), 419; https://doi.org/10.3390/a17090419 (registering DOI) - 20 Sep 2024
Abstract
Together with the growing interest towards renewable energy sources within the framework of different strategies of various countries, the number of solar power plants keeps growing. However, managing optimal power generation for solar power plants has its own challenges. First comes the problem [...] Read more.
Together with the growing interest towards renewable energy sources within the framework of different strategies of various countries, the number of solar power plants keeps growing. However, managing optimal power generation for solar power plants has its own challenges. First comes the problem of work interruption and reduction in power generation. As the system must be tolerant to the faults, the relevance and significance of short-term forecasting of solar power generation becomes crucial. Within the framework of this research, the applicability of different forecasting methods for short-time forecasting is explained. The main goal of the research is to show an approach regarding how to make the forecast more accurate and overcome the above-mentioned challenges using opensource data as features. The data clustering algorithm based on KMeans is proposed to train unique models for specific groups of data samples to improve the generation forecast accuracy. Based on practical calculations, machine learning models based on Random Forest algorithm are selected which have been proven to have higher efficiency in predicting the generation of solar power plants. The proposed algorithm was successfully tested in practice, with an achieved accuracy near to 90%. Full article
(This article belongs to the Special Issue Algorithms for Time Series Forecasting and Classification)
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37 pages, 2367 KiB  
Article
Waste Management and Innovation: Insights from Europe
by Lucio Laureti, Alberto Costantiello, Fabio Anobile, Angelo Leogrande and Cosimo Magazzino
Recycling 2024, 9(5), 82; https://doi.org/10.3390/recycling9050082 (registering DOI) - 19 Sep 2024
Viewed by 216
Abstract
This paper analyzes the relationship between urban waste recycling and innovation systems in Europe. Data from the Global Innovation Index for 34 European countries in the period 2013–2022 were used. To analyze the characteristics of European countries in terms of waste recycling capacity, [...] Read more.
This paper analyzes the relationship between urban waste recycling and innovation systems in Europe. Data from the Global Innovation Index for 34 European countries in the period 2013–2022 were used. To analyze the characteristics of European countries in terms of waste recycling capacity, the k-Means algorithm optimized with the Elbow method and the Silhouette Coefficient was used. The results show that the optimal number of clusters is three. Panel data results show that waste recycling increases with domestic market scale, gross capital formation, and the diffusion of Information and Communication Technologies (ICTs), while it decreases with the infrastructure index, business sophistication index, and the average expenditure on research and development of large companies. Full article
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14 pages, 914 KiB  
Article
Identifying Key Factors for Securing a Champions League Position in French Ligue 1 Using Explainable Machine Learning Techniques
by Spyridon Plakias, Christos Kokkotis, Michalis Mitrotasios, Vasileios Armatas, Themistoklis Tsatalas and Giannis Giakas
Appl. Sci. 2024, 14(18), 8375; https://doi.org/10.3390/app14188375 - 18 Sep 2024
Viewed by 433
Abstract
Introduction: Performance analysis is essential for coaches and a topic of extensive research. The advancement of technology and Artificial Intelligence (AI) techniques has revolutionized sports analytics. Aim: The primary aim of this article is to present a robust, explainable machine learning (ML) model [...] Read more.
Introduction: Performance analysis is essential for coaches and a topic of extensive research. The advancement of technology and Artificial Intelligence (AI) techniques has revolutionized sports analytics. Aim: The primary aim of this article is to present a robust, explainable machine learning (ML) model that identifies the key factors that contribute to securing one of the top three positions in the standings of the French Ligue 1, ensuring participation in the UEFA Champions League for the following season. Materials and Methods: This retrospective observational study analyzed data from all 380 matches of the 2022–23 French Ligue 1 season. The data were obtained from the publicly-accessed website “whoscored” and included 34 performance indicators. This study employed Sequential Forward Feature Selection (SFFS) and various ML algorithms, including XGBoost, Support Vector Machine (SVM), and Logistic Regression (LR), to create a robust, explainable model. The SHAP (SHapley Additive Explanations) model was used to enhance model interpretability. Results: The K-means Cluster Analysis categorized teams into groups (TOP TEAMS, 3 teams/REST TEAMS, 17 teams), and the ML models provided significant insights into the factors influencing league standings. The LR classifier was the best-performing classifier, achieving an accuracy of 75.13%, a recall of 76.32%, an F1-score of 48.03%, and a precision of 35.17%. “SHORT PASSES” and “THROUGH BALLS” were features found to positively influence the model’s predictions, while “TACKLES ATTEMPTED” and “LONG BALLS” had a negative impact. Conclusions: Our model provided satisfactory predictive accuracy and clear interpretability of results, which gave useful information to stakeholders. Specifically, our model suggests adopting a strategy during the ball possession phase that relies on short passes (avoiding long ones) and aiming to enter the attacking third and the opponent’s penalty area with through balls. Full article
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20 pages, 3794 KiB  
Article
Travel Time Variability in Urban Mobility: Exploring Transportation System Reliability Performance Using Ridesharing Data
by Yuxin Sun and Ying Chen
Sustainability 2024, 16(18), 8103; https://doi.org/10.3390/su16188103 - 17 Sep 2024
Viewed by 439
Abstract
Travel time variability (TTV) is a crucial indicator of transportation network performance, assessing travel time reliability and delays. This study investigates TTV metrics within the context of shared mobility using probe data from transportation network companies (TNCs) in Chicago, Los Angeles, and Dallas–Fort [...] Read more.
Travel time variability (TTV) is a crucial indicator of transportation network performance, assessing travel time reliability and delays. This study investigates TTV metrics within the context of shared mobility using probe data from transportation network companies (TNCs) in Chicago, Los Angeles, and Dallas–Fort Worth. Eight reliability metrics are analyzed and compared for each origin–destination (OD) pair in the network, including standard deviation (SD), the Planning Time Index (PTI), the Travel Time Index (TTI), the Buffer Index (BI), On-time Measures PR (alpha), and the Misery Index (MI), to evaluate their effectiveness in clustering OD pairs using K-means clustering. The findings confirm that SD, PTI, and MI are particularly effective in measuring travel time reliability and clustering within urban systems. This study identifies the most unbalanced supply–demand OD pairs/regions in each city, noting that low/medium-SD clusters around metropolitan airports indicate stable travel times even in high-demand zones, while high-SD clusters in downtown areas reveal significant traffic demands and unreliability. These patterns become more pronounced in study areas with multiple city centers. This study highlights the need for targeted strategies to enhance travel time reliability, particularly in regions like Dallas–Fort Worth, where public transportation alternatives are limited. Full article
(This article belongs to the Section Sustainable Transportation)
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22 pages, 8213 KiB  
Article
Managing the Supply–Demand Mismatches and Potential Flows of Ecosystem Services in Jilin Province, China, from a Regional Integration Perspective
by Xinyue Jin, Jianguo Wang, Daping Liu, Shujie Li, Yi Zhang and Guojian Wang
Viewed by 315
Abstract
Regional integration strategically reorganizes spatially heterogeneous resources to maximize the overall benefits. Ecosystem services (ESs) are promising targets for regional integration due to their inherent heterogeneity and mobility, yet research in this area remains limited. This study quantifies crop production (CP), water yield [...] Read more.
Regional integration strategically reorganizes spatially heterogeneous resources to maximize the overall benefits. Ecosystem services (ESs) are promising targets for regional integration due to their inherent heterogeneity and mobility, yet research in this area remains limited. This study quantifies crop production (CP), water yield (WY), carbon storage (CS), and habitat quality (HQ) for the years 2000, 2010, and 2020 using the InVEST model and identifies four ES bundles through a K-means cluster analysis. A conceptual ecosystem service flow (ESF) network at the service cluster scale is constructed based on county-level ESF data. The results reveal the following: (1) there is an upward trend in the ES budget for all services from 2000 to 2020, coupled with spatial mismatches between supply and demand; (2) deficit nodes for CP and CS services are concentrated in densely populated districts, while deficits in WY and HQ services are mainly in western Jilin Province; (3) Bundles I and II act as “sources” of ES, Bundle IV serves as a “sink”, and Bundle III is the only cluster with a CP surplus, balancing CP services across the province. In addition, this study provides ecological perspectives for understanding regional integration by suggesting differentiated integrated management for different ecosystem bundles. Full article
(This article belongs to the Special Issue Deciphering Land-System Dynamics in China)
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18 pages, 552 KiB  
Article
An Enhanced K-Means Clustering Algorithm for Phishing Attack Detections
by Abdallah Al-Sabbagh, Khalil Hamze, Samiya Khan and Mahmoud Elkhodr
Electronics 2024, 13(18), 3677; https://doi.org/10.3390/electronics13183677 - 16 Sep 2024
Viewed by 423
Abstract
Phishing attacks continue to pose a significant threat to cybersecurity, employing increasingly sophisticated techniques to deceive victims into revealing sensitive information or downloading malware. This paper presents a comprehensive study on the application of Machine Learning (ML) techniques for identifying phishing websites, with [...] Read more.
Phishing attacks continue to pose a significant threat to cybersecurity, employing increasingly sophisticated techniques to deceive victims into revealing sensitive information or downloading malware. This paper presents a comprehensive study on the application of Machine Learning (ML) techniques for identifying phishing websites, with a focus on enhancing detection accuracy and efficiency. We propose an approach that integrates the CfsSubsetEval attribute evaluator with the K-Means Clustering algorithm to improve phishing detection capabilities. Our method was evaluated using datasets of varying sizes (2000, 7000, and 10,000 samples) from a publicly available repository. Simulation results demonstrate that our approach achieves an accuracy of 89.2% on the 2000-sample dataset, outperforming the traditional kernel K-Means algorithm, which achieved an accuracy of 51.5%. Further analysis using precision, recall, and F1-score metrics corroborates the effectiveness of our method. We also discuss the scalability and real-world applicability of our approach, addressing limitations and proposing future research directions. This study contributes to the ongoing efforts to develop robust, efficient, and adaptable phishing detection systems in the face of evolving cyber threats. Full article
(This article belongs to the Special Issue Artificial Intelligence and Applications—Responsible AI)
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21 pages, 1072 KiB  
Article
Community Detection Using Deep Learning: Combining Variational Graph Autoencoders with Leiden and K-Truss Techniques
by Jyotika Hariom Patil, Petros Potikas, William B. Andreopoulos and Katerina Potika
Information 2024, 15(9), 568; https://doi.org/10.3390/info15090568 - 16 Sep 2024
Viewed by 389
Abstract
Deep learning struggles with unsupervised tasks like community detection in networks. This work proposes the Enhanced Community Detection with Structural Information VGAE (VGAE-ECF) method, a method that enhances variational graph autoencoders (VGAEs) for community detection in large networks. It incorporates community structure information [...] Read more.
Deep learning struggles with unsupervised tasks like community detection in networks. This work proposes the Enhanced Community Detection with Structural Information VGAE (VGAE-ECF) method, a method that enhances variational graph autoencoders (VGAEs) for community detection in large networks. It incorporates community structure information and edge weights alongside traditional network data. This combined input leads to improved latent representations for community identification via K-means clustering. We perform experiments and show that our method works better than previous approaches of community-aware VGAEs. Full article
(This article belongs to the Special Issue Optimization Algorithms and Their Applications)
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21 pages, 2749 KiB  
Article
Identification of Flow Pressure-Driven Leakage Zones Using Improved EDNN-PP-LCNetV2 with Deep Learning Framework in Water Distribution System
by Bo Dong, Shihu Shu and Dengxin Li
Processes 2024, 12(9), 1992; https://doi.org/10.3390/pr12091992 - 15 Sep 2024
Viewed by 333
Abstract
This study introduces a novel deep learning framework for detecting leakage in water distribution systems (WDSs). The key innovation lies in a two-step process: First, the WDS is partitioned using a K-means clustering algorithm based on pressure sensitivity analysis. Then, an encoder–decoder neural [...] Read more.
This study introduces a novel deep learning framework for detecting leakage in water distribution systems (WDSs). The key innovation lies in a two-step process: First, the WDS is partitioned using a K-means clustering algorithm based on pressure sensitivity analysis. Then, an encoder–decoder neural network (EDNN) model is employed to extract and process the pressure and flow sensitivities. The core of the framework is the PP-LCNetV2 architecture that ensures the model’s lightweight, which is optimized for CPU devices. This combination ensures rapid, accurate leakage detection. Three cases are employed to evaluate the method. By applying data augmentation techniques, including the demand and measurement noises, the framework demonstrates robustness across different noise levels. Compared with other methods, the results show this method can efficiently detect over 90% of leakage across different operating conditions while maintaining a higher recognition of the magnitude of leakages. This research offers a significant improvement in computational efficiency and detection accuracy over existing approaches. Full article
(This article belongs to the Section Process Control and Monitoring)
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18 pages, 334 KiB  
Article
Association of Dietary Patterns, Suspected Sarcopenia, and Frailty Syndrome among Older Adults in Poland—A Cross-Sectional Study
by Robert Gajda, Marzena Jeżewska-Zychowicz, Ewa Raczkowska, Karolina Rak, Małgorzata Szymala-Pędzik, Łukasz Noculak and Małgorzata Sobieszczańska
Nutrients 2024, 16(18), 3090; https://doi.org/10.3390/nu16183090 - 13 Sep 2024
Viewed by 510
Abstract
Background: The association of sarcopenia and frailty syndrome with dietary patterns is not yet well recognized. The aim: The aim of the study was to evaluate the association among dietary patterns, suspected sarcopenia, and frailty syndrome among older people in Poland. Methods: The [...] Read more.
Background: The association of sarcopenia and frailty syndrome with dietary patterns is not yet well recognized. The aim: The aim of the study was to evaluate the association among dietary patterns, suspected sarcopenia, and frailty syndrome among older people in Poland. Methods: The study was conducted in 2022 and 2023 among people aged 55 and older. The sample was chosen arbitrarily. The following questionnaires were used in the study: the KomPAN (assessment of frequency of food intake and sociodemographic characteristics), the SARC-F (assessment of risk of sarcopenia), and the EFS (diagnosis of frailty syndrome). To confirm the suspicion of sarcopenia, muscle strength was assessed using the HGS and FTSST, and physical fitness was assessed using the GST. Based on the frequency of food consumption, 11 DPs (factors) were selected using PCA analysis. SARC-F, HGS, FTSST, and GST results were used to identify homogeneous groups (clusters) using cluster analysis, a k-means method. Results: Two clusters were identified: cluster 1 (the non-sarcopenic cluster, or nSC) and cluster 2 (the sarcopenic cluster, or SC). Associations between variables were assessed using logistic regression. Suspected sarcopenia was found in 32.0% of respondents, more in men than women, and more among those either over 75 or 65 and under. EFS results showed that the risk (22.1%) or presence of frailty syndrome (23.8%) was more common in men than women and more common in those aged 75 and older than in other age groups. Male gender; older age; and unfavorable dietary patterns, i.e., consumption of white bread and bakery products, white rice and pasta, butter, and potatoes (factor 1) and cheese, cured meat, smoked sausages, and hot dogs (factor 9), increased the likelihood of sarcopenia and frailty syndrome, while the pattern associated with fruit and water consumption (factor 7) had the opposite effect. Conclusions: Confirmation of the importance of dietary patterns in the etiology and pathogenesis of sarcopenia and frailty syndrome should be documented in prospective cohort studies. Full article
23 pages, 5712 KiB  
Article
Sparse Fuzzy C-Means Clustering with Lasso Penalty
by Shazia Parveen and Miin-Shen Yang
Symmetry 2024, 16(9), 1208; https://doi.org/10.3390/sym16091208 - 13 Sep 2024
Viewed by 394
Abstract
Clustering is a technique of grouping data into a homogeneous structure according to the similarity or dissimilarity measures between objects. In clustering, the fuzzy c-means (FCM) algorithm is the best-known and most commonly used method and is a fuzzy extension of k-means in [...] Read more.
Clustering is a technique of grouping data into a homogeneous structure according to the similarity or dissimilarity measures between objects. In clustering, the fuzzy c-means (FCM) algorithm is the best-known and most commonly used method and is a fuzzy extension of k-means in which FCM has been widely used in various fields. Although FCM is a good clustering algorithm, it only treats data points with feature components under equal importance and has drawbacks for handling high-dimensional data. The rapid development of social media and data acquisition techniques has led to advanced methods of collecting and processing larger, complex, and high-dimensional data. However, with high-dimensional data, the number of dimensions is typically immaterial or irrelevant. For features to be sparse, the Lasso penalty is capable of being applied to feature weights. A solution for FCM with sparsity is sparse FCM (S-FCM) clustering. In this paper, we propose a new S-FCM, called S-FCM-Lasso, which is a new type of S-FCM based on the Lasso penalty. The irrelevant features can be diminished towards exactly zero and assigned zero weights for unnecessary characteristics by the proposed S-FCM-Lasso. Based on various clustering performance measures, we compare S-FCM-Lasso with the S-FCM and other existing sparse clustering algorithms on several numerical and real-life datasets. Comparisons and experimental results demonstrate that, in terms of these performance measures, the proposed S-FCM-Lasso performs better than S-FCM and existing sparse clustering algorithms. This validates the efficiency and usefulness of the proposed S-FCM-Lasso algorithm for high-dimensional datasets with sparsity. Full article
(This article belongs to the Special Issue Symmetry in Intelligent Algorithms)
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21 pages, 11139 KiB  
Article
The Transcriptional Landscape of Berry Skin in Red and White PIWI (“Pilzwiderstandsfähig”) Grapevines Possessing QTLs for Partial Resistance to Downy and Powdery Mildews
by Francesco Scariolo, Giovanni Gabelli, Gabriele Magon, Fabio Palumbo, Carlotta Pirrello, Silvia Farinati, Andrea Curioni, Aurélien Devillars, Margherita Lucchin, Gianni Barcaccia and Alessandro Vannozzi
Plants 2024, 13(18), 2574; https://doi.org/10.3390/plants13182574 - 13 Sep 2024
Viewed by 370
Abstract
PIWI, from the German word Pilzwiderstandsfähig, meaning “fungus-resistant”, refers to grapevine cultivars bred for resistance to fungal pathogens such as Erysiphe necator (the causal agent of powdery mildew) and Plasmopara viticola (the causal agent of downy mildew), two major diseases in viticulture. These [...] Read more.
PIWI, from the German word Pilzwiderstandsfähig, meaning “fungus-resistant”, refers to grapevine cultivars bred for resistance to fungal pathogens such as Erysiphe necator (the causal agent of powdery mildew) and Plasmopara viticola (the causal agent of downy mildew), two major diseases in viticulture. These varieties are typically developed through traditional breeding, often crossbreeding European Vitis vinifera with American or Asian species that carry natural disease resistance. This study investigates the transcriptional profiles of exocarp tissues in mature berries from four PIWI grapevine varieties compared to their elite parental counterparts using RNA-seq analysis. We performed RNA-seq on four PIWI varieties (two red and two white) and their noble parents to identify differential gene expression patterns. Comprehensive analyses, including Differential Gene Expression (DEGs), Gene Set Enrichment Analysis (GSEA), Weighted Gene Co-expression Network Analysis (WGCNA), and tau analysis, revealed distinct gene clusters and individual genes characterizing the transcriptional landscape of PIWI varieties. Differentially expressed genes indicated significant changes in pathways related to organic acid metabolism and membrane transport, potentially contributing to enhanced resilience. WGCNA and k-means clustering highlighted co-expression modules linked to PIWI genotypes and their unique tolerance profiles. Tau analysis identified genes uniquely expressed in specific genotypes, with several already known for their defense roles. These findings offer insights into the molecular mechanisms underlying grapevine resistance and suggest promising avenues for breeding strategies to enhance disease resistance and overall grape quality in viticulture. Full article
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18 pages, 1135 KiB  
Article
Applications of Fuzzy Logic and Probabilistic Neural Networks in E-Service for Malware Detection
by Kristijan Kuk, Aleksandar Stanojević, Petar Čisar, Brankica Popović, Mihailo Jovanović, Zoran Stanković and Olivera Pronić-Rančić
Viewed by 338
Abstract
The key point in the process of agent-based management in e-service for malware detection (according to accuracy criteria) is a decision-making process. To determine the optimal e-service for malware detection, two concepts were investigated: Fuzzy Logic (FL) and Probabilistic Neural Networks (PNN). In [...] Read more.
The key point in the process of agent-based management in e-service for malware detection (according to accuracy criteria) is a decision-making process. To determine the optimal e-service for malware detection, two concepts were investigated: Fuzzy Logic (FL) and Probabilistic Neural Networks (PNN). In this study, three evolutionary variants of fuzzy partitioning, including regular, hierarchical fuzzy partitioning, and k-means, were used to automatically process the design of the fuzzy partition. Also, this study demonstrates the application of a feature selection method to reduce the dimensionality of the data by removing irrelevant features to create fuzzy logic in a dataset. The behaviors of malware are analyzed by fuzzifying relevant features for pattern recognition. The Apriori algorithm was applied to the fuzzified features to find the fuzzy-based rules, and these rules were used for predicting the output of malware detection e-services. Probabilistic neural networks were also used to find the ideal agent-based model for numerous classification problems. The numerical results show that the agent-based management performances trained with the clustering method achieve an accuracy of 100% with the PNN-MCD model. This is followed by the FL model, which classifies on the basis of linguistic variables and achieves an average accuracy of 82%. Full article
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27 pages, 7586 KiB  
Article
Application of Enhanced K-Means and Cloud Model for Structural Health Monitoring on Double-Layer Truss Arch Bridges
by Chengzhong Gui, Dayong Han, Liang Gao, Yingai Zhao, Liang Wang, Xianglong Xu and Yijun Xu
Infrastructures 2024, 9(9), 161; https://doi.org/10.3390/infrastructures9090161 - 12 Sep 2024
Viewed by 634
Abstract
Bridges, as vital infrastructure, require ongoing monitoring to maintain safety and functionality. This study introduces an innovative algorithm that refines bridge component performance assessment through the integration of modified K-means clustering, silhouette coefficient optimization, and cloud model theory. The purpose is to provide [...] Read more.
Bridges, as vital infrastructure, require ongoing monitoring to maintain safety and functionality. This study introduces an innovative algorithm that refines bridge component performance assessment through the integration of modified K-means clustering, silhouette coefficient optimization, and cloud model theory. The purpose is to provide a reliable method for monitoring the safety and serviceability of critical infrastructure, particularly double-layer truss arch bridges. The algorithm processes large datasets to identify patterns and manage uncertainties in structural health monitoring (SHM). It includes field monitoring techniques and a model-driven approach for establishing assessment thresholds. The main findings, validated by case studies, show the algorithm’s effectiveness in enhancing clustering quality and accurately evaluating bridge performance using multiple indicators, such as statistical significance, cluster centroids, average silhouette coefficient, Davies–Bouldin index, average deviation, and Sign-Rank test p-values. The conclusions highlight the algorithm’s utility in assessing structural integrity and aiding data-driven maintenance decisions, offering scientific support for bridge preservation efforts. Full article
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26 pages, 14446 KiB  
Article
Decoding the Characteristics of Ecosystem Services and the Scale Effect in the Middle Reaches of the Yangtze River Urban Agglomeration: Insights for Planning and Management
by Ruiqi Zhang, Chunguang Hu and Yucheng Sun
Sustainability 2024, 16(18), 7952; https://doi.org/10.3390/su16187952 - 11 Sep 2024
Viewed by 368
Abstract
A thorough exploration of Ecosystem Services (ESs) and their intricate interactions across time and space is a prerequisite for the sustainable management of multiple ESs. This study aimed to systematically evaluate the ESs of the middle reaches of the Yangtze River Urban Agglomeration [...] Read more.
A thorough exploration of Ecosystem Services (ESs) and their intricate interactions across time and space is a prerequisite for the sustainable management of multiple ESs. This study aimed to systematically evaluate the ESs of the middle reaches of the Yangtze River Urban Agglomeration (MRYRUA) across multiple spatial and temporal scales, thereby enhancing ecosystem management and informed scientific decision-making. Specifically, this study employed the InVEST model, hot spot analysis, a geographically weighted regression model, and self-organizing feature mapping combined with K-means clustering to systematically quantify the spatiotemporal characteristics, trade-offs, synergies, and ecosystem service clusters of habitat quality (HQ), water yield (WY), carbon storage (CS), soil conservation (SC), and landscape aesthetics (LA) at grid and county scales from 2000 to 2020. The results revealed the following: (1) There was significant spatial heterogeneity among various ESs, with an overall spatial pattern exhibiting layered and interwoven variations. (2) Trade-offs predominantly characterized the relationships among ESs in the MRYRUA, with the absolute values of correlation coefficients mostly reaching their nadir in 2010. The interaction strengths between HQ and CS, and between CS and SC, increased with scale, while the relationships and strengths between LA and other ESs were less affected by scale changes. (3) At the grid scale, five types of ecosystem service bundles (ESBs) were identified, whereas at the district scale, four types of ESBs were delineated, including three common types: the WY–LA synergy bundle, Ecological transition bundle, and Key synergetic bundle, and three distinct types: the HQ–CS synergy bundle, Integrated ecological bundle, and Key synergetic bundle. The transitions of these ESBs over the 20 year period generally exhibited fluctuating evolutionary characteristics, with more pronounced fluctuations as the scale expanded. The results improve our comprehension of how ESs are related across various scales and provide theoretical and scientific references for multi-scale sustainable ecosystem zoning management and ecological environment governance. Full article
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15 pages, 2970 KiB  
Article
scVGATAE: A Variational Graph Attentional Autoencoder Model for Clustering Single-Cell RNA-seq Data
by Lijun Liu, Xiaoyang Wu, Jun Yu, Yuduo Zhang, Kaixing Niu and Anli Yu
Viewed by 436
Abstract
Single-cell RNA sequencing (scRNA-seq) is now a successful technology for identifying cell heterogeneity, revealing new cell subpopulations, and predicting developmental trajectories. A crucial component in scRNA-seq is the precise identification of cell subsets. Although many unsupervised clustering methods have been developed for clustering [...] Read more.
Single-cell RNA sequencing (scRNA-seq) is now a successful technology for identifying cell heterogeneity, revealing new cell subpopulations, and predicting developmental trajectories. A crucial component in scRNA-seq is the precise identification of cell subsets. Although many unsupervised clustering methods have been developed for clustering cell subpopulations, the performance of these methods is prone to be affected by dropout, high dimensionality, and technical noise. Additionally, most existing methods are time-consuming and fail to fully consider the potential correlations between cells. In this paper, we propose a novel unsupervised clustering method called scVGATAE (Single-cell Variational Graph Attention Autoencoder) for scRNA-seq data. This method constructs a reliable cell graph through network denoising, utilizes a novel variational graph autoencoder model integrated with graph attention networks to aggregate neighbor information and learn the distribution of the low-dimensional representations of cells, and adaptively determines the model training iterations for various datasets. Finally, the obtained low-dimensional representations of cells are clustered using kmeans. Experiments on nine public datasets show that scVGATAE outperforms classical and state-of-the-art clustering methods. Full article
(This article belongs to the Special Issue 2nd Edition of Computational Methods in Biology)
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