Raphanus sativus (radish): 108835992
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Entry
108835992 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: probable threonine--tRNA ligase, cytoplasmic
KO
K01868
threonyl-tRNA synthetase [EC:
6.1.1.3
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
108835992
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
rsz01007
]
108835992
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rsz03016
]
108835992
Enzymes [BR:
rsz01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.3 threonine---tRNA ligase
108835992
Amino acid related enzymes [BR:
rsz01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
108835992
Transfer RNA biogenesis [BR:
rsz03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
108835992
Prokaryotic type
108835992
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2b
HGTP_anticodon
TGS
tRNA_SAD
tRNA-synt_His
Motif
Other DBs
NCBI-GeneID:
108835992
NCBI-ProteinID:
XP_056851468
UniProt:
A0A9W3CJK7
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Position
9:complement(3110341..3114388)
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AA seq
656 aa
AA seq
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MADDHPRDEAYILAVIEKRIRLFEEFQAKQLAEIQSRPHDQIKVTIGDGGDVKEGKRWET
TPTEIARQISAELANSALVSSVNNVLWDMNRPLEADCSLEFFSFDSDKGRDTFWRSTAHI
VLQQEYGCKLCIGPCKPRDEGFFYDAFYADLGLNEQHFPHTQPGAAPEGHPFERIEVTRG
QALEMFSDDNTFQAELLTEDKTTVYRCGPLVDLCSGPHIPNTSFVKAFKCLNVRFLLYIY
KATISFLFFYSXSLLSPAQFLSVLLGQHHQLFFCHPLSPGSWFFEKHGTRVYNKLMHFIR
EEYRKRGYEEVISPNIYNMKLWETSGHAANYKENMFTFDIDKQEFGLKPMNCPGHCLMFQ
HRLRSCKELPIRLADFGVLHRNEASGALSDLTCARRFQQDDAHIFCTKDQVSGELKRALE
FVDYVYTKFGFTYDLKLSTRPDKYIGDVTTWDRAERDLEEALEDFGKPFLVNRGAGAFYG
PKIDITISDAMKSYVQCATLQLDFQLPALFELEYTAMAEGNSDTPVMIHRAVLGSVERMF
TTLLEHYKGKWPFWLSPRQAIVCSLSKDYDEYAEKVREQIHEAGYYADVDIIDRNISKKV
REAQVLKYNYILVVGAEETTRGLVTVRRRNEDRSKFPVMSVGNLLDELELKTANFL
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgatcatcccagggacgaggcttatatcttagccgtcatcgagaagcgcatc
aggctcttcgaggagttccaagcgaagcagctcgcggagattcagtctcggccgcacgac
cagatcaaggttacaattggagatggtggagacgtgaaagaagggaagagatgggagacg
actccaacagaaatcgcgaggcaaatctctgcggaattggcgaactcagcgcttgtttct
tcggtaaacaatgtcctgtgggacatgaataggccactggaagctgattgttcgcttgag
tttttcagtttcgacagcgacaaaggccgtgatactttctggcgttctaccgctcacatt
gttctccaacaggagtatggttgtaagctctgcattggcccctgcaaacctagagatgag
ggtttcttctacgatgcattctatgccgatctgggcttaaacgagcaacactttccccat
actcaaccaggggctgctccagaagggcatccatttgaaaggattgaagtgaccaggggt
caggcacttgagatgttttctgatgataatacttttcaggctgaactcctcaccgaggac
aaaaccaccgtctacaggtgtggtcctttggttgatctctgtagtggaccacatatacca
aatacttcctttgtgaaagctttcaagtgtttgaatgtgagattcctactctatatctac
aaagctacaatttcttttcttttcttttactcanctagtcttttgtctcccgctcagttt
ctttcggtgctattaggccaacatcaccaacttttcttttgtcacccactcagccctggg
agttggttcttcgagaaacatggcactcgcgtatataataagctgatgcatttcatccgg
gaggaatatcggaaaaggggctacgaagaggtcatttcaccaaatatttacaacatgaaa
ctctgggaaacatctgggcatgctgcaaactacaaggaaaatatgttcacgtttgatatt
gataaacaggagttcgggctcaaacctatgaactgccctggtcactgcttgatgttccaa
cacaggcttcgctcgtgcaaagaattacccattagactggccgactttggagtgttacat
cgaaatgaggcaagtggagctcttagtgacttgacctgtgcccgacggttccagcaggat
gatgcacacatattctgtacaaaggatcaggttagtggagaattgaaacgtgcattggag
ttcgttgactatgtttacacaaaatttgggtttacctatgacctaaagctctcaacgaga
ccagacaagtacattggagacgtaacaacatgggatagagcagaaagggaccttgaagaa
gcactagaagattttggaaagccgttccttgtgaacagaggagccggggcattctatggt
ccgaagatagacataacaatatctgatgcaatgaaaagctacgtccagtgtgctacttta
caacttgattttcaacttcctgccctcttcgagctggaatacacagctatggctgaaggg
aattcggatacacctgtgatgatacatagagcggtgttaggatctgttgagcgtatgttt
accacattgttggagcattacaaaggaaaatggcccttctggcttagtccgcgccaggcc
atagtatgctcgctgtcaaaggattatgatgaatacgctgaaaaggtgagagaacaaatt
cacgaagctgggtactatgctgatgttgacataatagacagaaacatcagcaagaaggtg
cgagaagctcaggttctgaagtacaactacatactggttgtgggtgctgaagaaactaca
aggggacttgtgactgttcgtcgaagaaacgaagaccgttcgaagttcccagtgatgagc
gtcgggaatctgctggatgaattggaactcaagacggccaactttctctga
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