Raphanus sativus (radish): 108810599
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Entry
108810599 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: threonine--tRNA ligase, mitochondrial 1
KO
K01868
threonyl-tRNA synthetase [EC:
6.1.1.3
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
108810599
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
rsz01007
]
108810599
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rsz03016
]
108810599
Enzymes [BR:
rsz01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.3 threonine---tRNA ligase
108810599
Amino acid related enzymes [BR:
rsz01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
108810599
Transfer RNA biogenesis [BR:
rsz03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
108810599
Prokaryotic type
108810599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2b
HGTP_anticodon
TGS
tRNA_SAD
Motif
Other DBs
NCBI-GeneID:
108810599
NCBI-ProteinID:
XP_018438207
UniProt:
A0A6J0JR84
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All DBs
Position
6:14969042..14973509
Genome browser
AA seq
676 aa
AA seq
DB search
MEANHPKDEAYLSAVIPKRISLFEQIQANQLEKLNSXPIKVTLPDGSVIEGKRWESTPVD
MARRVSKGLANSALVSAVNDELWDMCRPXCKLEFFKFDSEKGRDTLWHSSAHILGQALEQ
EYGCKLGPCATRGEGFYYDAFYDGLALNDKHFPNIKAAAAKAAKEAQPFERIEVTKDQAF
EMFSDNNFKVEIIKASPADKTITVYRCGRLVDLCHGPHIPNTSFVKAFECLKASSAYWSG
SEDPQNPVSLQRVYGISYPDQKQLKKYLQVLEEAKKYDHRIXGQNQELFFCHPLSPGSWF
FLPLGTRLYNKLMEFIKEQYRKRGYTEVITPNMYNMKLWDTSGHAAKYKDNMFTFDIEKQ
EFGLKPMNCPGHCLMFQHKVRSYRELPIRLADFGVLHRNEESGALSGLTRVRRFQQDDAH
IFCTEDQVMDEVKAVLEFIDYAYKIFGFTYELKLSTRPKNYLGDLKTWDKAENDLKVALD
AFGKKWLLNEGDGAFYGPKIDITVSDAMSRKFQCATLQLDFQLPADRFELEYSDEDEGKK
EKKKPRPVMIHRAVLGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSKKSEEYALQVKR
QIHEAGYYVDADITDRKIDKKVREAQVAQYNYILVVGESEAATGQVSVRLRDSAAHSAKS
IQDLLEDFKTKTAEYQ
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggaagctaaccatccaaaggacgaggcgtatctctccgccgttatccccaagcgtatc
agcctcttcgagcagatccaagccaaccagctcgagaagctcaactcanntccgatcaag
gttacgttgccagatgggagcgtgatagaagggaagagatgggagagtactccagtggat
atggcgaggcgggtttcgaaaggtttggcgaattctgcgttggtttcagcggttaacgat
gagctttgggatatgtgtaggccannttgtaagctcgagtttttcaaatttgatagtgag
aaaggtcgggatactctttggcattctagtgctcacattcttggtcaggctcttgagcag
gagtatgggtgtaagttaggaccatgtgcaaccagaggggagggtttctactatgatgca
ttttatgatggcttggcgctgaacgacaaacacttccctaatatcaaagcagctgctgca
aaagccgctaaggaagcgcaaccatttgaaaggatcgaagtgacgaaggatcaggcattt
gagatgttttctgacaacaattttaaggttgaaatcatcaaggcgtcgcctgccgacaaa
accattactgtctacagatgtggccgtcttgttgacttgtgtcatggaccgcacatacca
aacacttcttttgtaaaagcattcgagtgtttaaaggcctcatcagcttactggagcggt
agcgaagaccctcagaaccctgtgagcttgcagagagtttatgggatatcttatccagat
cagaaacagctaaagaaatatcttcaagttcttgaagaagcaaaaaagtatgaccacaga
atttaaggccagaatcaggaactcttcttttgtcatccactcagtcctgggagttggttc
ttccttccattaggcactcgtttatataacaagttgatggaatttattaaagagcaatat
cggaaaaggggttacacagaggttataacgccaaatatgtacaacatgaagctgtgggac
acttctggacatgctgcaaagtacaaggacaatatgtttacctttgatattgagaaacaa
gagtttgggctcaaacctatgaattgccctggtcactgcttgatgttccaacacaaggtg
cgctcatacagagagttacctattagactggccgactttggagtgttacaccgtaatgag
gaaagtggagcacttagtgggttgacacgtgtccgacggttccagcaagatgatgcacac
atattctgtacagaggatcaggttatggatgaagtgaaggctgtgttggagttcatcgac
tatgcatataaaatttttggctttacctatgagttaaagctttcaacgaggccaaaaaat
taccttggagatttgaaaacatgggataaagctgaaaacgatctcaaagtagccctagat
gcttttggaaagaaatggctgttgaacgaaggagatggtgcattttatggcccaaagata
gacatcacagtctctgatgcaatgagtaggaagttccagtgtgctacattacagcttgat
tttcaacttcctgcagatcgattcgaactggagtactcagacgaggacgaagggaaaaag
gagaagaagaagccgagacctgtgatgatacacagagcagtgttgggatcagtggagcgt
atgtttgccatactgctggagcattacaaagggaagtggcccttctggctcagtccacgc
caggccatagtttgccctgtatcaaagaaatctgaggagtatgcattacaggtgaaaaga
caaatccatgaagctgggtactatgttgatgcggacataacagacagaaagattgataaa
aaggtgcgagaagctcaagttgctcagtacaactacatacttgtagttggtgaatctgaa
gctgctacaggacaggtgagtgtacggttaagagacagtgcagcccactcggcgaagagc
atccaggatttgctggaagatttcaagaccaagactgcagaatatcaatga
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