Panicum virgatum (switchgrass): 120663401
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Entry
120663401 CDS
T07260
Name
(RefSeq) threonine--tRNA ligase, mitochondrial 1-like
KO
K01868
threonyl-tRNA synthetase [EC:
6.1.1.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120663401
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120663401
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120663401
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.3 threonine---tRNA ligase
120663401
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
120663401
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
120663401
Prokaryotic type
120663401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2b
HGTP_anticodon
TGS
tRNA_SAD
tRNA-synt_His
Motif
Other DBs
NCBI-GeneID:
120663401
NCBI-ProteinID:
XP_039798140
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All DBs
Position
3N:333850..342313
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AA seq
744 aa
AA seq
DB search
MLVCLRRGLSLVRQHTPRRPRFLPSPPLHPARRFLHHLSAAHGMGEGSAAGKDAKGKAKA
KAKAPAAASAPVVARDDSYLEAVTHKRVRMFEEIQARQAVDRLNIGGEVIKVTLPDGAIK
EGKKWITTPMDIAKEISSGLAASCLIAQVDETLWDMGRPLEGDCKLQLFKFDSNEGRDTF
WHSSAHILGESIERAYGCKLCIGPCTTRGEGFYYDAYYNDLTLNEEHFGIIESQAQKAVA
EKQPFERIEVSRAEALEMFAENKFKVEIINELPEDKTITVYRCGPLVDLCRGPHIPNTSF
VKAFACLKASSSYWRGKADRESLQRVYGISFPDSKRLKEYKHFLEEAKKRDHRLLGQAQE
LFFFHPLSPGSCFFLPHGARIYNKLMDFLRQQYRDRGYQEVLSPNIYNMQLWETSGHAAN
YKENMFVFEIEKQEFGLKPMNCPGHCLMFDNRVRSYRELPLRMADFGVLHRNELSGALTG
LTRVRRFQQDDAHIFCRENQIKDEVKGVLEFINHVYEIFGFKYELELSTRPEKYLGDIET
WNKAEQQLTEALNEFGKPWQINEGDGAFYGPKIDIGVFDALKRKFQCATLQLDFQHPLRF
KLTYSAEDEAKLERPVMIHRAILGSVERMFAILLEHYNGKWPLWLSPRQVIVCSVSSGSA
EYGKQVLARLHEAGFHVDIDIGDRTIQKKVREAQVAQFNYILVVGAQEAETGNVCVRVRD
SANLSTMSVDGIITRLREEIAAFK
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgctagtttgcctccggcgaggcctctcgctcgtcaggcagcacacaccccggcggccc
cgcttccttccctcgccgcctctccatcccgcccgccgcttcctgcaccacctctccgcc
gcccacgggatgggtgagggctccgctgccggaaaggacgccaaggggaaggccaaggcc
aaggccaaggcccccgccgcggcttcggccccggtcgtcgcgcgcgatgactcctacctg
gaggccgtcacacacaagagggtccgcatgttcgaggagatccaggctaggcaggccgtc
gaccggctcaacatcggcggcgaggtcatcaaagtaactctacctgatggcgctatcaag
gaagggaagaagtggataacaaccccaatggatatcgctaaggagatatcaagcggattg
gcagctagctgtttgatagctcaagtggacgaaacactctgggatatggggaggccgctg
gaaggtgactgtaaattgcagttgttcaagtttgatagcaatgaagggcgtgacaccttc
tggcactcaagtgctcatattcttggagagtctattgagagagcatatggctgcaagctg
tgtattgggccttgcaccacaagaggggagggtttctactacgatgcttactacaatgat
ctgacattgaatgaggagcactttggtatcatagaaagccaagctcaaaaggctgttgcg
gaaaaacagccatttgaacgcattgaggtcagcagagcagaggctcttgaaatgttcgct
gaaaataaattcaaggttgaaatcattaatgagttgcccgaagacaagaccattacagta
tataggtgtggtcctttagttgacctatgccgtgggccgcacatcccgaatacttccttt
gtcaaagctttcgcttgtctgaaggcttcatcatcatattggagaggaaaagcagaccgc
gaaagcctgcagagagtatatggaatttctttccctgattctaaacgtctcaaggaatat
aaacattttttagaggaggctaaaaaacgtgatcataggttactaggacaggcacaggaa
ctcttctttttccatccgcttagccctggaagctgcttcttccttccacatggtgctagg
atatataataaactgatggactttttgcgacagcaatacagagatagaggataccaagag
gtgttgagcccaaatatttacaatatgcaactttgggaaacttctggacatgcggcaaac
tacaaggagaacatgttcgttttcgagattgagaagcaggaatttggactgaagccgatg
aattgccctggccactgtctaatgtttgataatagagttcgttcatacagagagttgccc
cttcgcatggctgattttggagttcttcatagaaacgagcttagtggtgcacttacaggt
ttgacacgtgttaggagattccagcaggacgatgctcatatcttttgcagagagaaccaa
atcaaagatgaagttaagggtgttttggagttcatcaatcatgtttacgagatatttggc
ttcaaatacgagttggagttgtctacgagaccagagaagtatttgggtgatattgaaacc
tggaacaaggcagagcaacaattgacagaagccttgaatgaatttgggaagccgtggcag
attaatgaaggagatggtgctttctacggtccaaaaattgatattggtgtgtttgatgcc
ctcaagaggaaatttcaatgtgcaacactacagctggattttcagcacccccttcgcttc
aagctgacttactcagccgaggatgaagccaaacttgaaagacctgtgatgatacacaga
gcaatcttaggatccgttgaaaggatgtttgccattcttttggagcattacaacggtaaa
tggcccttgtggctaagccctcgccaggtcattgtttgctcagtatcttctggttcagca
gaatatggaaaacaggtccttgccaggctacatgaagctggttttcatgttgacattgac
attggtgacagaacaatccaaaagaaggtacgggaagcccaagtagcccagttcaactac
attcttgttgtcggtgcacaagaggcagagactggaaatgtatgtgttagggtaagagac
agtgccaacctatccacaatgagcgttgatggcatcatcacacgtttaagggaggaaata
gcagccttcaaatga
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