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Codon Usage Bias in the Photolyase Gene of Amsacta moorei Entomopoxvirus
AbstractAmsacta moorei entomopoxvirus (AMEV) is a poxvirus exclusively infecting insects and has been considered as a potential biological control...
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Comparative analysis of codon usage bias in chloroplast genomes of ten medicinal species of Rutaceae
Rutaceae family comprises economically important plants due to their extensive applications in spices, food, oil, medicine, etc. The Rutaceae plants...
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Analysis of chloroplast genome characteristics and codon usage bias in 14 species of Annonaceae
For the study of species evolution, chloroplast gene expression, and transformation, the chloroplast genome is an invaluable resource. Codon usage...
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Comparative analysis of codon usage bias in the chloroplast genomes of eighteen Ampelopsideae species (Vitaceae)
BackgroundThe tribe Ampelopsideae plants are important garden plants with both medicinal and ornamental values. The study of codon usage bias (CUB)...
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Codon usage bias analysis of mitochondrial protein-coding genes in 12 species of Candida
The incidence of diseases that are caused by fungal infection is gradually increasing, together with antibiotic abuse and the number of patients with...
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Codon usage bias and phylogenetic analysis of chloroplast genome in 36 gracilariaceae species
Gracilariaceae is a group of marine large red algae and main source of agar with important economic and ecological value. The codon usage patterns of...
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Phylogenetic exploration, codon usage bias, and genomic divergence in Hydrocotyle: a comparative plastome study across different geographical locations
Hydrocotyle himalaica from Bhutan, a perennial herb that thrives from 1500 to 2600 m, possesses both ecological importance and medicinal properties....
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Codon usage bias analysis of the gene encoding NAD+-dependent DNA ligase protein of Invertebrate iridescent virus 6
The genome of Invertebrate iridescent virus 6 (IIV6) contains a sequence that shows similarity to eubacterial NAD + -dependent DNA ligases. The...
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Translation Comes First: Ancient and Convergent Selection of Codon Usage Bias Across Prokaryotic Genomes
Codon usage is the outcome of different evolutionary processes and can inform us about the conditions in which organisms live and evolve. Here, we...
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GenRCA: a user-friendly rare codon analysis tool for comprehensive evaluation of codon usage preferences based on coding sequences in genomes
BackgroundThe study of codon usage bias is important for understanding gene expression, evolution and gene design, providing critical insights into...
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A Symphony of Roles for Codon Usage in Fungal Genomics
Codon usage bias, or the uneven use of synonymous codons, is a universal feature of genes and genomes. Although previously considered silent,...
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Codon usage bias
Codon usage bias is the preferential or non-random use of synonymous codons, a ubiquitous phenomenon observed in bacteria, plants and animals....
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Mutational Bias and Natural Selection Driving the Synonymous Codon Usage of Single-Exon Genes in Rice (Oryza sativa L.)
The relative abundance of single-exon genes (SEGs) in higher plants is perplexing. Uncovering the synonymous codon usage pattern of SEGs will benefit...
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Adaption of tobacco rattle virus to its solanaceous hosts is related to the codon usage bias of the hosts and that of the viral 16 K gene
Tobacco rattle virus (TRV) is a member of the genus Tobravirus , family Virgaviridae , that infects many different plants from 50 families. TRV-based...
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Codon usage bias and evolution analysis in the mitochondrial genome of Mesona chinensis Benth
Mesona chinensis Benth (MCB) is an edible and medicinal plant in southern China and Southeast Asian countries. Mitochondria, semi-autonomous...
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Codon usage bias and genetic diversity in chloroplast genomes of Elaeagnus species (Myrtiflorae: Elaeagnaceae)
Codon usage bias (CUB) reveals the characteristics of species and can be utilized to understand their evolutionary relationship, increase the target...
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Analysis of codon usage bias of WRKY transcription factors in Helianthus annuus
BackgroundThe phenomenon of codon usage bias is known to exist in many genomes and is mainly determined by mutation and selection. Codon usage bias...
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Comparative analysis of codon usage patterns in 16 chloroplast genomes of suborder Halimedineae
The Halimedineae are marine green macroalgae that play crucial roles as primary producers in various habitats, including coral reefs, rocky shores,...
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Chloroplast gene expression level is negatively correlated with evolutionary rates and selective pressure while positively with codon usage bias in Ophioglossum vulgatum L
BackgroundCharacterization of the key factors determining gene expression level has been of significant interest. Previous studies on the...
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Intraspecific and interspecific variations in the synonymous codon usage in mitochondrial genomes of 8 pleurotus strains
In this study, we investigated the codon bias of twelve mitochondrial core protein coding genes (PCGs) in eight Pleurotus strains, two of which are...
