pathogen
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This data specification harmonizes contextual data to support HPAI monitoring with PHA4GE. It provides standardized, ontology-based fields and terms for comprehensive surveillance. Users can implement it via their preferred tools, including DataHarmonizer. Field and reference guides, along with curation and new term request SOPs, support its use.
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Sep 27, 2024
Paper - Functional disruption varies with infection intensity in an amphibian fungal panzootic
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Feb 28, 2024 - HTML
Code used for analysis in the publication: Disentangling the link between zebrafish diet, gut microbiome succession, and Mycobacterium chelonae infection. Don't hesitate to reach out with any questions.
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Aug 10, 2023 - HTML
The scripts to reproduce the analysis of the HPI prediction paper
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May 9, 2019 - Jupyter Notebook
Pathogen Informatics Center: Analysis, Networking, Translation & Education
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May 21, 2024 - Shell
A data specification for harmonizing One Health Canadian COVID pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a the DataHarmonizer, supported by field and reference guides as well as different curation and new term request SOPs.
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Jul 17, 2024
Just a repository with my VIM configuration file and plugins, for others to use and for me to clone on new computers.
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May 30, 2022 - Vim Script
My personal dotfiles. I heve created it to remember my settings, especially vim settings.
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Mar 2, 2023 - Python
They're dotfiles
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May 10, 2018 - AutoHotkey
Discover transcription factor (TF) binding specificities/sites (TFBS) using binding site motif sequence and structural information.
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Jun 17, 2024 - Python
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Apr 1, 2018 - Vim Script
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Aug 27, 2024 - Python
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