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Gene Expression Omnibus

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For more gene expression terminology, see Glossary of gene expression terms.
Gene Expression Omnibus
Content
DescriptionGene expression profiling and RNA methylation database
Contact
Research centerNational Center for Biotechnology Information
Primary citationEdgar R & al. (2002)[1]
Access
Websitehttps://www.ncbi.nlm.nih.gov/gds/?term=

Gene Expression Omnibus (GEO) is a database for gene expression profiling and RNA methylation profiling managed by the National Center for Biotechnology Information (NCBI).[1] These high-throughput screening genomics data are derived from microarray or RNA-Seq experimental data.[2] These data need to conform to the minimum information about a microarray experiment (MIAME) format.[3]

Glossary

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Abbreviation Description
GDS DataSet accession
GPL Platform accession
GSE Series accession
GSM Sample accession

References

[edit]
  1. ^ a b Edgar, R; Domrachev, M; Lash, AE (1 January 2002). "Gene Expression Omnibus: NCBI gene expression and hybridization array data repository". Nucleic Acids Research. 30 (1): 207–10. doi:10.1093/nar/30.1.207. PMC 99122. PMID 11752295.
  2. ^ Barrett, T; Wilhite, SE; Ledoux, P; Evangelista, C; Kim, IF; Tomashevsky, M; Marshall, KA; Phillippy, KH; Sherman, PM; Holko, M; Yefanov, A; Lee, H; Zhang, N; Robertson, CL; Serova, N; Davis, S; Soboleva, A (January 2013). "NCBI GEO: archive for functional genomics data sets--update". Nucleic Acids Research. 41 (Database issue): D991-5. doi:10.1093/nar/gks1193. PMC 3531084. PMID 23193258.
  3. ^ Brazma, A; Hingamp, P; Quackenbush, J; Sherlock, G; Spellman, P; Stoeckert, C; Aach, J; Ansorge, W; Ball, CA; Causton, HC; Gaasterland, T; Glenisson, P; Holstege, FC; Kim, IF; Markowitz, V; Matese, JC; Parkinson, H; Robinson, A; Sarkans, U; Schulze-Kremer, S; Stewart, J; Taylor, R; Vilo, J; Vingron, M (December 2001). "Minimum information about a microarray experiment (MIAME)-toward standards for microarray data". Nature Genetics. 29 (4): 365–71. doi:10.1038/ng1201-365. PMID 11726920. S2CID 6994467.
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