Position weight matrix: Revision history

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curprev 21:4621:46, 23 September 2024 Synpath talk contribs 11,839 bytes +24 Adding class=skin-invert-image to dark drawings for readability in dark mode per https://www.mediawiki.org/wiki/Recommendations_for_night_mode_compatibility_on_Wikimedia_wikis#Apply_filters_to_dark_images_with_transparent_background undo Tag: 2017 wikitext editor

curprev 21:2921:29, 15 December 2023 Arjayay talk contribs m 11,815 bytes −4 Duplicate word removed undo

curprev 04:5304:53, 14 December 2023 Artoria2e5 talk contribs 11,819 bytes +731 →Uses: hmm undo

curprev 06:5206:52, 3 December 2023 Citation bot talk contribs 11,088 bytes +36 Add: doi-access. | Use this bot. Report bugs. | #UCB_CommandLine undo

curprev 21:3321:33, 2 October 2023 76.132.5.147 talk 11,052 bytes −7 The computations described below are log-odds, not log-likelihood undo

curprev 07:3807:38, 8 November 2022 I dream of horses talk contribs m 11,059 bytes +38 →Background: Autowikibrowser cleanup, added Empty section (1) tag undo Tag: AWB

curprev 18:2618:26, 10 May 2022 JoeNMLC talk contribs 11,021 bytes +26 →See also: add section; add ScerTF undo

curprev 08:3808:38, 18 February 2022 Synthaze talk contribs 10,995 bytes −2,019 →Background: has been finally removed because it is inconsistent with all other content in this article. undo Tag: section blanking
curprev 08:1208:12, 18 February 2022 Synthaze talk contribs 13,014 bytes −631 →Background: The reference https://www.ncbi.nlm.nih.gov/pmc/articles/PMC320670/pdf/nar00378-0235.pdf which attributes PWM introduction to Stormo is not appropriate. There is zero mention of neither "PWM", "position weight matrix", "position W matrix", etc... Moreover, the whole →Background: background section should be deleted because it is not related at all with the →Creation: section below. There is a severe confusion between PWM definition and weight matrix in neural networks. undo Tag: references removed

curprev 05:5605:56, 6 December 2021 Jonesey95 talk contribs 13,645 bytes +45 Fix Linter errors. undo

curprev 23:4423:44, 16 January 2021 Dawnseeker2000 talk contribs m 13,600 bytes −14 date format audit, minor formatting undo Tag: AWB

curprev 13:2313:23, 24 November 2020 81.191.116.205 talk 13,614 bytes −47 Undid revision 990431598 by 81.191.116.205 (talk) undo Tag: Undo
curprev 12:5712:57, 24 November 2020 81.191.116.205 talk 13,661 bytes +47 No edit summary undo Tag: Reverted

curprev 00:1900:19, 18 April 2020 OAbot talk contribs m 13,614 bytes +32 Open access bot: doi added to citation with #oabot. undo

curprev 14:4814:48, 24 March 2020 Malum123 talk contribs 13,582 bytes −14 →Conversion of sequence to position probability matrix undo

curprev 02:0602:06, 13 March 2020 126.164.248.29 talk 13,596 bytes +6 →Conversion of sequence to position probability matrix: using more accurate words undo Tags: Mobile edit Mobile app edit Android app edit

curprev 17:0017:00, 26 December 2019 Rjwilmsi talk contribs m 13,590 bytes +14 →Background: Journal cites:, added 1 PMID undo Tag: AWB

curprev 12:3812:38, 20 August 2019 109.182.114.100 talk 13,576 bytes +13 →Information content undo
curprev 12:3712:37, 20 August 2019 109.182.114.100 talk 13,563 bytes −3 →Information content undo
curprev 12:3712:37, 20 August 2019 109.182.114.100 talk 13,566 bytes 0 →Information content undo

curprev 00:4400:44, 28 November 2018 Citation bot talk contribs m 13,566 bytes −15 Alter: title. Add: pmid, pmc. Removed parameters. You can use this bot yourself. Report bugs here. | User-activated; Category:Bioinformatics. undo

curprev 16:2516:25, 8 June 2018 Jmertel23 talk contribs m 13,581 bytes +4 link UniPROBE using Find link undo

curprev 19:2619:26, 14 March 2018 Kahtar talk contribs m 13,577 bytes −6 Repair CS1 error(s), replaced: work=http:// → work=, typo(s) fixed: Therefore → Therefore, using AWB undo

curprev 11:4211:42, 13 February 2018 8.39.120.143 talk 13,583 bytes −2 →Conversion of position probability matrix to position weight matrix undo Tags: Mobile edit Mobile web edit

curprev 02:4002:40, 17 September 2017 Evolution and evolvability talk contribs m 13,585 bytes −59 →Uses: ce undo Tag: Visual edit
curprev 02:3902:39, 17 September 2017 Evolution and evolvability talk contribs 13,644 bytes +92 Heading formatting undo Tag: Visual edit

curprev 08:5908:59, 10 April 2017 Rjwilmsi talk contribs m 13,552 bytes +40 Journal cites:, added 2 PMIDs, added 1 PMC using AWB (12151) undo

curprev 11:0311:03, 27 September 2016 130.229.49.37 talk 13,512 bytes 0 log_2(1/0.25)=2, and nothing else undo

curprev 16:3016:30, 26 August 2016 Hsp90 talk contribs m 13,512 bytes 0 →Creating the PWM: base 2 not "e" is used for PWM construction (consult any bioinformatic package biopython implementation, or e.g. http://www.ncbi.nlm.nih.gov/Class/Structure/pssm/pssm_viewer.cgi?mode=help&params=Position,COG3871,1,,,1,,,,,,&q=5) undo

curprev 00:5800:58, 12 June 2016 Tom.Reding talk contribs m 13,512 bytes −108 Fix Category:Pages using citations with accessdate and no URL when perm identifier present (doi|bibcode|arxiv|pmid|jstor|isbn|issn|lccn|oclc|ismn|hdl) (rem access-date) using AWB undo

curprev 23:3323:33, 5 May 2016 Sbandya1 talk contribs m 13,620 bytes −1 →Creating the PWM: Changed log10 transformation to natural log based on PWM values undo Tag: Visual edit

curprev 23:0823:08, 30 November 2015 Amkilpatrick talk contribs m 13,621 bytes 0 Undid revision 693150975 by 24.6.95.252 (talk) was correct before (note switch of 'random' and 'functional') undo
curprev 19:2519:25, 30 November 2015 24.6.95.252 talk 13,621 bytes 0 No edit summary undo

curprev 23:0923:09, 16 October 2015 Non-dropframe talk contribs 13,621 bytes −103 Reverted 3 good faith edits by Никский using STiki undo
curprev 23:0123:01, 16 October 2015 Никский talk contribs 13,724 bytes +103 →External links undo
curprev 22:5922:59, 16 October 2015 Никский talk contribs 13,621 bytes −102 →External links undo
curprev 22:5722:57, 16 October 2015 Никский talk contribs 13,723 bytes +102 →External links undo

curprev 00:2800:28, 2 September 2015 Monkbot talk contribs m 13,621 bytes +1 →Using PWMs: Task 7c: repair/replace et al. in cs1 author/editor parameters; undo

curprev 16:0416:04, 2 August 2015 141.20.212.149 talk 13,620 bytes +2 →Creating the PWM undo
curprev 16:0316:03, 2 August 2015 141.20.212.149 talk 13,618 bytes +87 →Creating the PWM: Another difficult passage was improved concerning readability undo
curprev 14:1114:11, 2 August 2015 141.20.212.149 talk 13,531 bytes +19 →From Sequences to PWM: I had to update my previous changes; I considered to formulate a little bit better. undo
curprev 14:0714:07, 2 August 2015 141.20.212.149 talk 13,512 bytes +3 →From Sequences to PWM: a sentence seemed grammatically difficult to understand, therefore I changed it. undo

curprev 14:3114:31, 6 May 2015 Trappist the monk talk contribs m 13,509 bytes −13 →Using PWMs: Remove redundant |year= parameter from CS1 citations; using AWB undo

curprev 19:5919:59, 29 April 2015 RoadTrain talk contribs m 13,522 bytes 0 →Using PWMs: fix year undo

curprev 14:0714:07, 27 April 2015 Unknomics talk contribs m 13,522 bytes 0 →From Sequences to PWM: : Typo undo

curprev 21:3121:31, 10 November 2014 68.181.207.31 talk 13,522 bytes +2 No edit summary undo

curprev 14:0814:08, 24 October 2014 Thorwald talk contribs m 13,520 bytes −25 →From Sequences to PWM: rm "accessdate" in cite_journal, as those are never used in that tpl (those are permalinks) undo

curprev 15:1715:17, 22 October 2014 91.126.129.194 talk 13,545 bytes 0 →Creating the PWM undo

curprev 16:2716:27, 20 August 2014 Harlba talk contribs 13,545 bytes +8 →Using log likelihoods: Clarification of terms. undo
curprev 16:1416:14, 20 August 2014 Harlba talk contribs 13,537 bytes +457 →Basic PWM with frequencies: Included the concepts of PFM and PPM which are necessary in the creation of PWM. undo

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