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* Image registration methods for [[Otolaryngology–Head and Neck Surgery]].<ref>{{Cite journal|last=Nithiananthan|first=Sajendra|last2=Schafer|first2=Sebastian|last3=Uneri|first3=Ali|last4=Mirota|first4=Daniel J.|last5=Stayman|first5=J. Webster|last6=Zbijewski|first6=Wojciech|last7=Brock|first7=Kristy K.|last8=Daly|first8=Michael J.|last9=Chan|first9=Harley|date=2011-04-01|title=Demons deformable registration of CT and cone-beam CT using an iterative intensity matching approach|journal=Medical Physics|language=en|volume=38|issue=4|pages=1785–1798|doi=10.1118/1.3555037|pmid=21626913|pmc=3069990|issn=2473-4209}}</ref><ref>{{Cite journal|last=Nithiananthan|first=Sajendra|last2=Schafer|first2=Sebastian|last3=Mirota|first3=Daniel J.|last4=Stayman|first4=J. Webster|last5=Zbijewski|first5=Wojciech|last6=Reh|first6=Douglas D.|last7=Gallia|first7=Gary L.|last8=Siewerdsen|first8=Jeffrey H.|date=2012-09-01|title=Extra-dimensional Demons: A method for incorporating missing tissue in deformable image registration|journal=Medical Physics|language=en|volume=39|issue=9|pages=5718–5731|doi=10.1118/1.4747270|pmid=22957637|pmc=3443194|issn=2473-4209}}</ref>
* Mathematical models of 3D imaging performance in [[cone beam computed tomography]] (CBCT).<ref>{{Cite journal|last=Gang|first=G. J.|last2=Tward|first2=D. J.|last3=Lee|first3=J.|last4=Siewerdsen|first4=J. H.|date=2010-05-01|title=Anatomical background and generalized detectability in tomosynthesis and cone-beam CT|journal=Medical Physics|language=en|volume=37|issue=5|pages=1948–1965|doi=10.1118/1.3352586|pmid=20527529|pmc=2862054|issn=2473-4209}}</ref><ref>{{Cite journal|last=Tward|first=Daniel J.|last2=Siewerdsen|first2=Jeffrey H.|date=2008-12-01|title=Cascaded systems analysis of the 3D noise transfer characteristics of flat-panel cone-beam CT|journal=Medical Physics|language=en|volume=35|issue=12|pages=5510–5529|doi=10.1118/1.3002414|pmid=19175110|pmc=2673616|issn=2473-4209}}</ref>
* Mathematical models of [[Spectral imaging (radiography)|spectral]] and [[Phase-contrast X-ray imaging|phase-contrast]] imaging performance for [[photon counting]] x-ray detectors.<ref>{{Cite journal|last=Xu|first=J.|last2=Zbijewski|first2=W.|last3=Gang|first3=G.|last4=Stayman|first4=J. W.|last5=Taguchi|first5=K.|last6=Lundqvist|first6=M.|last7=Fredenberg|first7=E.|last8=Carrino|first8=J. A.|last9=Siewerdsen|first9=J. H.|date=2014-10-01|title=Cascaded systems analysis of photon counting detectors|journal=Medical Physics|language=en|volume=41|issue=10|pages=n/a|doi=10.1118/1.4894733|pmid=25281959|pmc=4281040|issn=2473-4209}}</ref><ref>{{Cite journal|last=Fredenberg|first=Erik|last2=Danielsson|first2=Mats|last3=Stayman|first3=J. Webster|last4=Siewerdsen|first4=Jeffrey H.|last5=Åslund|first5=Magnus|date=2012-08-10|title=Ideal-observer detectability in photon-counting differential phase-contrast imaging using a linear-systems approach: Ideal-observer detectability in differential phase-contrast imaging|url=http://doi.wiley.com/10.1118/1.4739195|journal=Medical Physics|language=en|volume=39|issue=9|pages=5317–5335|doi=10.1118/1.4739195|pmc=PMC3427340|pmid=22957600}}</ref>
* Mathematical models of 2D imaging performance for [[Flat panel detector|flat-panel detectors]].<ref>{{Cite journal|last=Siewerdsen|first=Jeffrey H.|date=1998-11-01|title=Signal, noise, and detective quantum efficiency of a-Si:H flat-panel imagers|journal=Medical Physics|language=en|volume=25|issue=11|pages=2250|doi=10.1118/1.598427|issn=2473-4209|hdl=2027.42/135065|url=https://deepblue.lib.umich.edu/bitstream/2027.42/135065/1/mp8427.pdf}}</ref><ref>{{Cite journal|last=Siewerdsen|first=J. H.|last2=Cunningham|first2=I. A.|last3=Jaffray|first3=D. A.|date=2002-11-01|title=A framework for noise-power spectrum analysis of multidimensional images|journal=Medical Physics|language=en|volume=29|issue=11|pages=2655–2671|doi=10.1118/1.1513158|pmid=12462733|issn=2473-4209}}</ref>
* Software tools for x-ray spectrum modeling (spektr).<ref>{{Cite journal|last=Siewerdsen|first=J. H.|last2=Waese|first2=A. M.|last3=Moseley|first3=D. J.|last4=Richard|first4=S.|last5=Jaffray|first5=D. A.|date=November 2004|title=Spektr: a computational tool for x-ray spectral analysis and imaging system optimization|journal=Medical Physics|volume=31|issue=11|pages=3057–3067|doi=10.1118/1.1758350|issn=0094-2405|pmid=15587659}}</ref><ref>{{Cite journal|last=Punnoose|first=J.|last2=Xu|first2=J.|last3=Sisniega|first3=A.|last4=Zbijewski|first4=W.|last5=Siewerdsen|first5=J. H.|date=2016-08-01|title=Technical Note: spektr 3.0—A computational tool for x-ray spectrum modeling and analysis|journal=Medical Physics|language=en|volume=43|issue=8Part1|pages=4711–4717|doi=10.1118/1.4955438|pmid=27487888|pmc=4958109|issn=2473-4209}}</ref>
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