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- research-articleJuly 2013
US-SOMO cluster methods: year one perspective
XSEDE '13: Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to DiscoveryArticle No.: 65, Pages 1–2https://doi.org/10.1145/2484762.2484815UltraScan Solution Modeler (US-SOMO) computes hydrodynamic parameters and small-angle scattering data from biological macromolecular structural representations and compares them with experimental data for structural determination and validation. At ...
- research-articleJuly 2012
Ultrascan solution modeler: integrated hydrodynamic parameter and small angle scattering computation and fitting tools
XSEDE '12: Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyondArticle No.: 42, Pages 1–8https://doi.org/10.1145/2335755.2335839UltraScan Solution Modeler (US-SOMO) processes atomic and lower-resolution bead model representations of biological and other macromolecules to compute various hydrodynamic parameters, such as the sedimentation and diffusion coefficients, relaxation ...
- research-articleAugust 2010
Performance optimization of large non-negatively constrained least squares problems with an application in biophysics
TG '10: Proceedings of the 2010 TeraGrid ConferenceArticle No.: 5, Pages 1–9https://doi.org/10.1145/1838574.1838579Solving large non-negatively constrained least squares systems is frequently used in the physical sciences to estimate model parameters which best fit experimental data. Analytical Ultracentrifugation (AUC) is an important hydrodynamic experimental ...
- ArticleJuly 2007
Parsimonious regularization using genetic algorithms applied to the analysis of analytical ultracentrifugation experiments
GECCO '07: Proceedings of the 9th annual conference on Genetic and evolutionary computationPages 361–368https://doi.org/10.1145/1276958.1277035Frequently in the physical sciences experimental data are analyzed to determine model parameters using techniques known as parameter estimation. Eliminating the effects of noise from experimental data often involves Tikhonov or Maximum-Entropy ...
